BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC24ZC12RM1.SCF screened BAC_end
         (903 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1486                                                        1459   0.0  

>3x_Contig1486 
          Length = 12131

 Score = 1459 bits (736), Expect = 0.0
 Identities = 838/861 (97%), Gaps = 9/861 (1%)
 Strand = Plus / Minus

                                                                        
Query: 47   gcttgtatcttcttctcctgtttttaaacactttgagtacaaatcaatgcactcttgata 106
            ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 2964 gcttgtatcttcttctcctgttcagaaacactttgagtacaaatcaatgcactcttgata 2905

                                                                        
Query: 107  tctgggatttgatacaacatcaatattgatcaatcacgtcgttcttgctcaacggtatct 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2904 tctgggatttgatacaacatcaatattgatcaatcacgtcgttcttgctcaacggtatct 2845

                                                                        
Query: 167  gctgtggcagtttttatgagttccttttatagtgcataagtaagatcaaatgtttttttt 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 2844 gctgtggcagtttttatgagttccttttatagtgcataagtaagatcaaatgttttggtt 2785

                                                                        
Query: 227  gattcaatatataaaatttttttaatatgttaacaataatcctattaaactaatatcaaa 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2784 gattcaatatataaaatttttttaatatgttaacaataatcctattaaactaatatcaaa 2725

                                                                        
Query: 287  cgaattcaacatggcactagtgactgacattaataaaggataactgcgatctgattatag 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2724 cgaattcaacatggcactagtgactgacattaataaaggataactgcgatctgattatag 2665

                                                                        
Query: 347  ttacactaacatcgaccttcaatacaccgaaagattctagaaaaagtctaaaatgtccgg 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2664 ttacactaacatcgaccttcaatacaccgaaagattctagaaaaagtctaaaatgtccgg 2605

                                                                        
Query: 407  ctctaaagtaggagctcctatggtacctccaatcaattgcatatacaactaccttcatca 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2604 ctctaaagtaggagctcctatggtacctccaatcaattgcatatacaactaccttcatca 2545

                                                                        
Query: 467  tcagacaacagtaacgttttggttatacgaacaagtacagacacgtataagaggcaagat 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2544 tcagacaacagtaacgttttggttatacgaacaagtacagacacgtataagaggcaagat 2485

                                                                        
Query: 527  cagaggctttgatgagttcatgaatgtggtaatagatgacgctttcgaaatagctgtaga 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2484 cagaggctttgatgagttcatgaatgtggtaatagatgacgctttcgaaatagctgtaga 2425

                                                                        
Query: 587  tccgaaaagtggtaaagagagcgatgataaagcagtgtttcttgngagaattatgttgaa 646
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2424 tccgaaaagtggtaaagagagcgatgataaagcagtgtttcttgggagaattatgttgaa 2365

                                                                        
Query: 647  aggtgataatataacacttgttgtggcanattgataatgcctactcagaaaatgataata 706
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2364 aggtgataatataacacttgttgtggcaaattgataatgcctactcagaaaatgataata 2305

                                                                        
Query: 707  ggatgaaagaaagatgcttagagtgtagaagcattgatcggactctgtcgtgt-attata 765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2304 ggatgaaagaaagatgcttagagtgtagaagcattgatcggactctgtcgtgtaattata 2245

                                                                        
Query: 766  taagcctgtatattat-acgg-aaaatgaaa-gcacttgaatttcgat-acggcgac-ag 820
            |||||||||||||||| |||| ||||||||| |||||  ||||||||| |||||||| ||
Sbjct: 2244 taagcctgtatattataacggaaaaatgaaaggcactgaaatttcgataacggcgacaag 2185

                                                                        
Query: 821  cactatcaagcttaat-aaga-atattgntcgtaat-ttatggatctatttacaatgtgt 877
            ||||||||||  |||| |||| |||||| ||||||| |||||||||||||||||||||||
Sbjct: 2184 cactatcaaggctaataaagatatattgttcgtaatcttatggatctatttacaatgtgt 2125

                                 
Query: 878  tgctcaaattggggaggatac 898
            |||||| ||||||||| ||||
Sbjct: 2124 tgctcagattggggagaatac 2104


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7037
Number of Sequences: 1807
Number of extensions: 7037
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)