BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZD01RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1643 1396 0.0
>3x_Contig1643
Length = 10865
Score = 1396 bits (704), Expect = 0.0
Identities = 754/764 (98%), Gaps = 5/764 (0%)
Strand = Plus / Plus
Query: 40 agatgcttttcgtttgactacaggaagaggtgantattctgttccaataatattcaattg 99
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1699 agatgcttttcgtttgactacaggaagaggtga-tattctgttccaataatattcaattg 1757
Query: 100 tccaatcatttactggaaatatgtacattgttaatcatagaagtataccaaatcatttta 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1758 tccaatcatttactggaaatatgtacattgttaatcatagaagtataccaaatcatttta 1817
Query: 160 ttcgcatgcgaagactcttccaatacaagcacttatcaggacacacttcgcatgatcttc 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1818 ttcgcatgcgaagactcttccaatacaagcacttatcaggacacacttcgcatgatcttc 1877
Query: 220 tccataagttggtgtgttgatgtggttgaccttttatttttttcttccttgattctcccc 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1878 tccataagttggtgtgttgatgtggttgaccttttatttttttcttccttgattctcccc 1937
Query: 280 tcatcgctattaaatgcctatagagaaataaaagatgagattttccggaattaaacttct 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1938 tcatcgctattaaatgcctatagagaaataaaagatgagattttccggaattaaacttct 1997
Query: 340 aaagcacgagaaagcccttttctgctatggctggttctatgtattatataccgaaagaag 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1998 aaagcacgagaaagcccttttctgctatggctggttctatgtattatataccgaaagaag 2057
Query: 400 acataaatctaaacatcatcaacagtttaaagaagcttgaatagcaaaccggacttgaat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2058 acataaatctaaacatcatcaacagtttaaagaagcttgaatagcaaaccggacttgaat 2117
Query: 460 caagcctttaatttaatcaacagagcagtactttatactctttcgtttgcgtctaccgaa 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2118 caagcctttaatttaatcaacagagcagtactttatactctttcgtttgcgtctaccgaa 2177
Query: 520 ctggaatcaatgttctttgaaagcatttcggtgcgtggtagcttcttttttttcaatatt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2178 ctggaatcaatgttctttgaaagcatttcggtgcgtggtagcttcttttttttcaatatt 2237
Query: 580 tttcacactaagcagcttttactatgggatgatgaatatcaacaaattctgaatattttt 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2238 tttcacactaagcagcttttactatgggatgatgaatatcaacaaattctgaatattttt 2297
Query: 640 atctatagatatcgatcttgacattaagagtcatactgaantatg-taatgaaactgaaa 698
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 2298 atctatagatatcgatcttgacattaagagtcatactgaa-tatgttaatgaaactgaaa 2356
Query: 699 cttgtataaaaacaacccattggttttcatacttttttttgtttccattaaacagattga 758
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 2357 cttgtataaaaacaacccattgg-tttcataactttttttgtttccattaaacagattga 2415
Query: 759 gcatctggtagaaattgtgcttctgggaaaaagccttttgtgga 802
||||| | |||||||||||||||| |||||||||| ||||||||
Sbjct: 2416 gcatcggttagaaattgtgcttct-ggaaaaagccatttgtgga 2458
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9731
Number of Sequences: 1807
Number of extensions: 9731
Number of successful extensions: 89
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)