BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZD02FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig153 1526 0.0
>3x_Contig153
Length = 1175
Score = 1526 bits (770), Expect = 0.0
Identities = 826/838 (98%), Gaps = 5/838 (0%)
Strand = Plus / Plus
Query: 87 ctgccaacatgcagatagacatttgatgtttaaagtcatcgttggatctgggaactgatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 ctgccaacatgcagatagacatttgatgtttaaagtcatcgttggatctgggaactgatt 132
Query: 147 ctgtcatacggtagagctcgaagttataaaccatgaccctaaaatctactgttgatgact 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ctgtcatacggtagagctcgaagttataaaccatgaccctaaaatctactgttgatgact 192
Query: 207 atactaaggagaaaaaggctggtgaaggtacgtatgccgtggtttatttgggaactaaga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atactaaggagaaaaaggctggtgaaggtacgtatgccgtggtttatttgggaactaaga 252
Query: 267 agtccactggaaggagtattgcggtgaaggagatcaagacctcacagttcaaagatggac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agtccactggaaggagtattgcggtgaaggagatcaagacctcacagttcaaagatggac 312
Query: 327 ttgacatgtcagcattacgtgaagtgaagtttctacaagagttgaagcatgtgaatgtta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttgacatgtcagcattacgtgaagtgaagtttctacaagagttgaagcatgtgaatgtta 372
Query: 387 ttgaattagtagacgttttcatggcaaacgataatttgaatttagtgttggagtttctac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttgaattagtagacgttttcatggcaaacgataatttgaatttagtgttggagtttctac 432
Query: 447 ctgccgacttggagatcattattaaggacacttctattatgttcagtccagcagatatta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctgccgacttggagatcattattaaggacacttctattatgttcagtccagcagatatta 492
Query: 507 agtcctggattctaatgactttgagaggtgtacaccattgtcatagaaacttcatacttc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agtcctggattctaatgactttgagaggtgtacaccattgtcatagaaacttcatacttc 552
Query: 567 atagagatttgaagccaaataatttactattagcacctgatggtcaattgaaaatcgcag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atagagatttgaagccaaataatttactattagcacctgatggtcaattgaaaatcgcag 612
Query: 627 attttggtctagccagactaatggcgtcaccacaggagattttgaccagtaacgttgtta 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 attttggtctagccagactaatggcgtcaccacaggagattttgaccagtaacgttgtta 672
Query: 687 ccagatggtacagagcaccggagctcttatttggtgcaaaacactacacctctgcggtcg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ccagatggtacagagcaccggagctcttatttggtgcaaaacactacacctctgcggtcg 732
Query: 747 atatctggtctgtcggtgttatattcgcagaa-taatgttgagaa-tccttatttgcccg 804
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct: 733 atatctggtctgtcggtgttatattcgcagaattaatgttgagaattccttatttgccgg 792
Query: 805 ggaaagatgatgttgatcagattaacgtaacattccgtgcgttaggacctcctactgatg 864
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 793 ggaaagatgatgttgatcagataaacgtaacattccgtgcgttaggaactcctactgatg 852
Query: 865 cggaatggccctgaagtttctaagttttagcactaataataaggattcaaatttatcc 922
|||| ||| |||||||||||| |||||||||| | ||||||| ||||||||| |||||
Sbjct: 853 cggattgg-cctgaagtttct-agttttagcaattataataa-gattcaaatatatcc 907
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5455
Number of Sequences: 1807
Number of extensions: 5455
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)