BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZD02RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1746 1402 0.0
>3x_Contig1746
Length = 26672
Score = 1402 bits (707), Expect = 0.0
Identities = 859/894 (96%), Gaps = 12/894 (1%)
Strand = Plus / Plus
Query: 45 gctttggtaacaccattggctgat-cattgggtgcggctatcggtgcc-caagagctgct 102
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 8944 gctttggtaacaccattggctgatacattgggtgcggctatcggtgccacaagagctgct 9003
Query: 103 gtcgattctggattctgtgataactctctacaaatcggtcaaaccggtaagatcgtagct 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9004 gtcgattctggattctgtgataactctctacaaatcggtcaaaccggtaagatcgtagct 9063
Query: 163 ccagaattatacatcgcacttggtgtttctggtgccattcaacatctcgctggtatttta 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 9064 ccagaattatacatcgcacttggtgtttctggtgccattcaacatctcgctggtatcaaa 9123
Query: 223 gacgccaagactatcgtcgctatcaacaaggaccctgaagctccaattttccaagtagca 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9124 gacgccaagactatcgtcgctatcaacaaggaccctgaagctccaattttccaagtagca 9183
Query: 283 gattatggtttggtcggagatttgaacgaattagtgcctgaattgactgaaaagttaaaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9184 gattatggtttggtcggagatttgaacgaattagtgcctgaattgactgaaaagttaaaa 9243
Query: 343 caataggaccagtcattcgtttgaatgatctccgtacttctttattctgatgttttccgc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9244 caataggaccagtcattcgtttgaatgatctccgtacttctttattctgatgttttccgc 9303
Query: 403 tttcaccccagttcaaagaacttttatcaaatgtaattagaccctgacagtaatatatac 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9304 tttcaccccagttcaaagaacttttatcaaatgtaattagaccctgacagtaatatatac 9363
Query: 463 gtattaacacctatatataataaatggaatgtttgcatacgtgcatgttataaacgtcat 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9364 gtattaacacctatatataataaatggaatgtttgcatacgtgcatgttataaacgtcat 9423
Query: 523 ctcaattataaaaaatcatttcaagccgacttaaagacaaccagtaccgtgtttaatttc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9424 ctcaattataaaaaatcatttcaagccgacttaaagacaaccagtaccgtgtttaatttc 9483
Query: 583 tcacttcttggcattctcttttcgtcttcttactcatcattacgcatgcattccaataaa 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9484 tcacttcttggcattctcttttcgtcttcttactcatcattacgcatgcattccaataaa 9543
Query: 643 at-attaggatccaaaaataatttgttctaactttggtttaccataatttaatgttgcaa 701
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9544 ataattaggatccaaaaataatttgttctaactttggtttaccataatttaatgttgcaa 9603
Query: 702 acagggagagaagataagaaataggttttgatgagatcccaattacaccattacatttcc 761
||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
Sbjct: 9604 aca-ggagagaagataagaaatagg-tttgatgagatcccaaatacaccattacattt-c 9660
Query: 762 ctatatgctcatataatatctgatctaccgnaaactgttttttttggccttttttta-ca 820
|||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||| ||
Sbjct: 9661 ctatatgctcatataatatctgatctaccgtaatctg-tttttttggtctttttttatca 9719
Query: 821 ttttaaaactacttc-taccggttttttttcgctat-agcttctacatgttggaaacatg 878
||||||||||||||| ||||| | | ||| |||||| |||| ||||||||| | ||||
Sbjct: 9720 ttttaaaactacttcgtaccgttatctttccgctatcagctcctacatgtt-gtaacaat 9778
Query: 879 ggtttttaaagactggaatgctggttttgctcccttaaaaaggcactcctaccg 932
|| |||| ||||| ||||||| ||||||||| | ||||||| ||||||||||
Sbjct: 9779 ggcttttcaagacctgaatgct-gttttgctcgataaaaaagggactcctaccg 9831
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7285
Number of Sequences: 1807
Number of extensions: 7285
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)