BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZD03FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1649 1576 0.0
>3x_Contig1649
Length = 14442
Score = 1576 bits (795), Expect = 0.0
Identities = 836/847 (98%), Gaps = 2/847 (0%)
Strand = Plus / Plus
Query: 86 gcagcaagaaaaggatgccagcttcaaggaaatggttacagacagtgaaaaaatcctacc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3827 gcagcaagaaaaggatgccagcttcaaggaaatggttacagacagtgaaaaaatcctacc 3886
Query: 146 aaaagatattactacctatcgtgtagcatttgattatcttcactataaatctcatagaag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3887 aaaagatattactacctatcgtgtagcatttgattatcttcactataaatctcatagaag 3946
Query: 206 tcctgacgatattgaactaaagacgtctattttcaatgatatatcaattctcgaaggttt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3947 tcctgacgatattgaactaaagacgtctattttcaatgatatatcaattctcgaaggttt 4006
Query: 266 tatctacgataacattttcacagcaaatcttcaagcccccgttcatctcatgatgcacca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4007 tatctacgataacattttcacagcaaatcttcaagcccccgttcatctcatgatgcacca 4066
Query: 326 ctcgtctgacaacagtaaagtgctaaacagcgtcaacgaatacaaccttgtgtggaattt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4067 ctcgtctgacaacagtaaagtgctaaacagcgtcaacgaatacaaccttgtgtggaattt 4126
Query: 386 tcatgaagtaatgagcagttttattagaatcaggaacttccccacattacctggaccacc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4127 tcatgaagtaatgagcagttttattagaatcaggaacttccccacattacctggaccacc 4186
Query: 446 ggtaataacagcttgcatggaaactccaaattctcagagccaacgaatcgaaataacaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4187 ggtaataacagcttgcatggaaactccaaattctcagagccaacgaatcgaaataacaaa 4246
Query: 506 ggcaatctttgataatactaacttggaatcatgcaaaaggatggaacaactctggaggac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4247 ggcaatctttgataatactaacttggaatcatgcaaaaggatggaacaactctggaggac 4306
Query: 566 ttaccaaacatggaacccaaatacgacgggcttaaagaaactacataatatattaagtgt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4307 ttaccaaacatggaacccaaatacgacgggcttaaagaaactacataatatattaagtgt 4366
Query: 626 tctccggctttatgactctggagagcaattgcaaaaggatgtatcaattgtttaaacagc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4367 tctccggctttatgactctggagagcaattgcaaaaggatgtatcaattgtttaaacagc 4426
Query: 686 atttacatagaaacttgaatctactgagctttacagcctatccagaaatagtactgttta 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4427 atttacatagaaacttgaatctactgagctttacagcctatccagaaatagtactgttta 4486
Query: 746 tctcattttttttttttttgactactcaaagtcacttttaataataatctgtttaatgat 805
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4487 tctca-tttttttttttttgactactcaaagtcacttttaataataatctgtttaatgat 4545
Query: 806 tattttcagacatcaaaacgccagaatcttaaagacttgccttttatacagcattatcca 865
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 4546 tattttcagacatcaaaacgcaggaatcttaaagacttgcctttaatacagcattatcca 4605
Query: 866 aaatggaaatatcggatgtcaccctatggaagtattctcgggcaaatatcagtcattatc 925
|||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||
Sbjct: 4606 aaatggaataatcgaatgtca-cctagtgaagtattctcgtgcaaatatcagtcattatc 4664
Query: 926 aatgaat 932
|||||||
Sbjct: 4665 aatgaat 4671
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,949
Number of Sequences: 1807
Number of extensions: 14949
Number of successful extensions: 392
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)