BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC24ZD06FM1.SCF screened BAC_end
         (841 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1606                                                         858   0.0  

>3x_Contig1606 
          Length = 11468

 Score =  858 bits (433), Expect = 0.0
 Identities = 513/533 (96%), Gaps = 5/533 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   tcgtgaacaagctgtgtaccagtacttaaattccaaataaatagatgagaattttggttg 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  tcgtgaacaagctgtgtaccagtacttaaattccaaataaatagatgagaattttggttg 885

                                                                        
Query: 147  gaattaccgactgcagcgattgtgtttgaatgaatttggtctattgtaagtgcgtcccag 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  gaattaccgactgcagcgattgtgtttgaatgaatttggtctattgtaagtgcgtcccag 945

                                                                        
Query: 207  ttgttaacgtgcacacttggcttgaacgaggtcaccaaatcatgatctgataatttaaat 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  ttgttaacgtgcacacttggcttgaacgaggtcaccaaatcatgatctgataatttaaat 1005

                                                                        
Query: 267  aacttaatgacactatcttttgctggaattgcatattggtctcctttattggtccatgca 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 aacttaatgacactatcttttgctggaattgcatattggtctcctttattggtccatgca 1065

                                                                        
Query: 327  actctagtgcatgttctgttatcttcgcatagcataggatcaagtccatctatagcgact 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 actctagtgcatgttctgttatcttcgcatagcataggatcaagtccatctatagcgact 1125

                                                                        
Query: 387  gaatcggcgttttcagtattattctcagtgtccgctggtagatcatcattgaagaatatc 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 gaatcggcgttttcagtattattctcagtgtccgctggtagatcatcattgaagaatatc 1185

                                                                        
Query: 447  ttaggtagctgatcatgcaatgtgtggattctatttggtgtagtagaacttaaagagttg 506
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 1186 ttaggtagctgatcatgcaatgtgtggattctattgggtgtagtagaacttaaagagtag 1245

                                                                        
Query: 507  aataccacgttacccgttactgatggatactgctaaaagggtatttttggtggttggatg 566
            ||||| |||||| ||||||||||  |||||||||| || | || ||||| | |||| |||
Sbjct: 1246 aatacaacgtta-ccgttactgagtgatactgctagaatgtta-ttttgtttgttgtatg 1303

                                                                 
Query: 567  aaaaaccaacccaattgtttcgcccaaagttaatttaaccgtttgaatttccc 619
            | |||| || ||| ||| |||| ||||||||||||||| ||||||||||||||
Sbjct: 1304 ataaactaa-ccagttg-ttcgtccaaagttaatttaa-cgtttgaatttccc 1353


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,468
Number of Sequences: 1807
Number of extensions: 18468
Number of successful extensions: 1781
Number of sequences better than 1.0e-20: 1
length of query: 841
length of database: 10,358,551
effective HSP length: 16
effective length of query: 825
effective length of database: 10,329,639
effective search space: 8521952175
effective search space used: 8521952175
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)