BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZD06RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1361 1647 0.0
>3x_Contig1361
Length = 8765
Score = 1647 bits (831), Expect = 0.0
Identities = 873/883 (98%), Gaps = 3/883 (0%)
Strand = Plus / Plus
Query: 49 atctatttccttcttcttaacgaggtttctccactccctccgacttattaattacacaac 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5468 atctatttccttcttcttaacgaggtttctccactccctccgacttattaattacacaac 5527
Query: 109 gttctaatgtttacatgacttgtataatgaacaaaactctaatgattagaaaagcaagat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5528 gttctaatgtttacatgacttgtataatgaacaaaactctaatgattagaaaagcaagat 5587
Query: 169 cattttcactttattcttcgttatccgattcttctgcacccaaaagttgtttctgattgg 228
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5588 cattttcactttattcttcgttatccgattcttctgcacccaaaagttgagtctgattgg 5647
Query: 229 tcgtggcacttatcaatccacgtttgactacgtgcaatgcgttgggaatcgttactccct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5648 tcgtggcacttatcaatccacgtttgactacgtgcaatgcgttgggaatcgttactccct 5707
Query: 289 tttcggatattcctgcaaattctttgccccacatcagaatacgttctcttattctattag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5708 tttcggatattcctgcaaattctttgccccacatcagaatacgttctcttattctattag 5767
Query: 349 ctttaataatacagtttcgtatcttttgtaaatttctgataaattcttgatttctttgta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5768 ctttaataatacagtttcgtatcttttgtaaatttctgataaattcttgatttctttgta 5827
Query: 409 aagctatctgagctaattgtcttgttgtctcgatgtcatcagagatttcattacttatcg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5828 aagctatctgagctaattgtcttgttgtctcgatgtcatcagagatttcattacttatcg 5887
Query: 469 gcacggtcatatcaccagtatgaaaatgtttcggtatgagtgatagcaaggtttcagatt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5888 gcacggtcatatcaccagtatgaaaatgtttcggtatgagtgatagcaaggtttcagatt 5947
Query: 529 ccgtaaactttgataatccaaaaaatgcttcttcatcctcaggtttaattgatttgctat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5948 ccgtaaactttgataatccaaaaaatgcttcttcatcctcaggtttaattgatttgctat 6007
Query: 589 ttgaactggcactgatataattctcatcgtcttcttctttgaaagtcagcttatgatcat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6008 ttgaactggcactgatataattctcatcgtcttcttctttgaaagtcagcttatgatcat 6067
Query: 649 attcaggtagcttcaaagcatcctcgtataaagcatctgggaaatctcccaagaagatct 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6068 attcaggtagcttcaaagcatcctcgtataaagcatctgggaaatctcccaagaagatct 6127
Query: 709 cgagaagtttagagtaattgataacattttcttgttccttctctaccatcaaaacattac 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6128 cgagaagtttagagtaattgataacattttcttgttccttctctaccatcaaaacattac 6187
Query: 769 tcaaagccaattcttttaatgcctggttccccaa-gttcttgaatgtgatggatgttgta 827
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 6188 tcaaagccaattcttttaatgcctggttcccaaaggttcttgaatgtgatggatgttgta 6247
Query: 828 tgacgtccttaagtgatgaaatgggtgaaagaatttccttcactgcccccaaattgttta 887
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6248 tgacgtccttaagtgatgaaatgggtgaaagaatttccttcactgcaaccaaattgttta 6307
Query: 888 gtatca-tatcgccgtcactggaatctgcactgttctcactct 929
| |||| |||||||||||||| |||||||||||| ||||||||
Sbjct: 6308 g-atcattatcgccgtcactgtaatctgcactgtcctcactct 6349
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8038
Number of Sequences: 1807
Number of extensions: 8038
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)