BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC24ZD10FM1.SCF screened BAC_end
         (919 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1253                                                        1503   0.0  

>3x_Contig1253 
          Length = 5628

 Score = 1503 bits (758), Expect = 0.0
 Identities = 809/824 (98%), Gaps = 2/824 (0%)
 Strand = Plus / Plus

                                                                        
Query: 88   taccagaaccggcagaagccggtggagttctgggttcaaattgaatataaacattttcag 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1560 taccagaaccggcagaagccggtggagttctgggttcaaattgaatataaacattttcag 1619

                                                                        
Query: 148  acgaagaatttataaccggatgagacttgggagtaaggatgagtgatccgttcatatcga 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1620 acgaagaatttataaccggatgagacttgggagtaaggatgagtgatccgttcatatcga 1679

                                                                        
Query: 208  tcggccgttgaagaatatgaggagaagtatatttcattttccctgatatattgtcctttg 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1680 tcggccgttgaagaatatgaggagaagtatatttcattttccctgatatattgtcctttg 1739

                                                                        
Query: 268  aagttatatgttttaatatgacatgtgtattttgttctttgctggagtcaacagcttcaa 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1740 aagttatatgttttaatatgacatgtgtattttgttctttgctggagtcaacagcttcaa 1799

                                                                        
Query: 328  tgtcaaaaagaacagtttgagggagtccaaagactcttctttcagttaaaatatcatcat 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1800 tgtcaaaaagaacagtttgagggagtccaaagactcttctttcagttaaaatatcatcat 1859

                                                                        
Query: 388  attcgttggattgagtttcaggtttcctggataacatctttgaaacccgaaagacgtatg 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1860 attcgttggattgagtttcaggtttcctggataacatctttgaaacccgaaagacgtatg 1919

                                                                        
Query: 448  gtcttagtgcagctagcttccataattctgtctctgacaaccccacattttttatcttgt 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1920 gtcttagtgcagctagcttccataattctgtctctgacaaccccacattttttatcttgt 1979

                                                                        
Query: 508  ctatccagttcttgtcctcagttgtcaagggtatttcaatattagcaatagaagttacat 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1980 ctatccagttcttgtcctcagttgtcaagggtatttcaatattagcaatagaagttacat 2039

                                                                        
Query: 568  gcgattttgagggcttgaaattagtctgaaagccataattattcacagaaaaattcttag 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2040 gcgattttgagggcttgaaattagtctgaaagccataattattcacagaaaaattcttag 2099

                                                                        
Query: 628  atatgaattccacagtattattaccaaaagagtttacatttnttggtcggcaaatgcttt 687
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 2100 atatgaattccacagtattattaccaaaagagtttacattt-ttggtcggcaaatgcttc 2158

                                                                        
Query: 688  caaaacagcgacttcgatgatcttaatgtccaactacataaaagattgtagacatttctg 747
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2159 caaaacagcgacttcgatgatcttaatgtccaactacataaaagattgtagacatttctg 2218

                                                                        
Query: 748  gaaactggttttnttgagctaatcaatagagacttccacgtcattttcacattcaa-tcc 806
            |||||||||||| ||||||||||||||||||||| |||||||||||  ||||  || || 
Sbjct: 2219 gaaactggtttttttgagctaatcaatagagactcccacgtcatttcaacatcaaattca 2278

                                                                        
Query: 807  anaaatggtttgatgatcgggtacatcatacagtacagctcaggcttttgaagtttcgat 866
            | ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 2279 aaaaatggtttgatgatcgggtacatcatacagtacagctcaggctttgaaagtttcgat 2338

                                                        
Query: 867  gcccattctatcaatagtagcatagtatactctcgcacccaaaa 910
            |||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 2339 gccatttctatcaatagtagcatagtatactctcgcacccaaaa 2382


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6719
Number of Sequences: 1807
Number of extensions: 6719
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)