BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZD11RM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig452 607 e-173
>3x_Contig452
Length = 1623
Score = 607 bits (306), Expect = e-173
Identities = 375/393 (95%), Gaps = 4/393 (1%)
Strand = Plus / Minus
Query: 218 tggtgcaatgatgaagaagaactagcgacttgaggcggcggcgtattgggccacatgaca 277
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1623 tggtgcaatgatgaagaagaactagcgacttgagncggcggcgtattgggccacatgaca 1564
Query: 278 cctggaatctgctggtgagagttgttactattaagtgagttttgttgtgaatgtatctgt 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1563 cctggaatctgctggtgagagttgttactattaagtgagttttgttgtgaatgtatctgt 1504
Query: 338 tggtgctggtgttgcaattgcagttggtgttggagctgcagctggagttggagttgatgc 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1503 tggtgctggtgttgcaattgcagttggtgttggagctgcagctggagttggagttgatgc 1444
Query: 398 tgaagctgttgctcatgttcttgtcgcagtgggacatccaccgaaccccaaaacgacgag 457
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1443 tgaagctgttgctcatgttcttgtcgcagtgggacatccaccgaaccccagaacgacgag 1384
Query: 458 agcatgggtaatttagccgtctgcattggatcaggcgactgtggaagtgattttcaacgt 517
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 1383 agcatgggtaatttagccgtctgcattggatcaggcgactgtggaggtgatttgcaacgt 1324
Query: 518 gagaccttgttcaagccgtcaattaattctttatttcgttttcaaaactggaatctgaat 577
|||| |||||||||| |||| || | |||| ||| ||| |||| | ||||| |||||||
Sbjct: 1323 gagagcttgttcaaggcgtcgataagttctctatctcg-tttcgatactgg-atctgaa- 1267
Query: 578 ttcgagcttgaattaaaacttcgaatttgcgct 610
||||||||||||||| ||| |||||||||||||
Sbjct: 1266 ttcgagcttgaattagaac-tcgaatttgcgct 1235
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6707
Number of Sequences: 1807
Number of extensions: 6707
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)