BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZD12RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 1098 0.0
>3x_Contig1509
Length = 8584
Score = 1098 bits (554), Expect = 0.0
Identities = 732/774 (94%), Gaps = 13/774 (1%)
Strand = Plus / Minus
Query: 54 atgactaaagagttatcatcgtcgttcaccgtatcataacttcaaaacgaaagtaactct 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8027 atgactaaagagttatcatcgtcgttcaccgtatcataacttcaaaacgaaagtaactct 7968
Query: 114 ttaccttcatgtgtatgttctgtagtgttctctgtctctgtttggacggacttttatcaa 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7967 ttaccttcatgtgtatgttctgtagtgttctctgtctctgtttggacggacttttatcaa 7908
Query: 174 ttttggaacgatgacagagacaaaataaccgcatagataaattttcaaacaaacaaacgg 233
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 7907 ttttggaacgatgacagagacaaaataaccgcatagataaacaaacaaacaaacaaacgg 7848
Query: 234 agcacgatacacgtaactggacaagaaactgcaaacagtatggatctggaatcagagatc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7847 agcacgatacacgtaactggacaagaaactgcaaacagtatggatctggaatcagagatc 7788
Query: 294 attcaactggtacggcaaaacataagaccaaaatttccttctttgaatgatgaacaacaa 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7787 attcaactggtacggcaaaacataagaccaaaatttccttctttgaatgatgaacaacaa 7728
Query: 354 gcaagattggacaatgcactgaagtatgatgtgaactacgatatattgaagaaagagcta 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7727 gcaagattggacaatgcactgaagtatgatgtgaactacgatatattgaagaaagagcta 7668
Query: 414 gtcgaatatatagatgattggaaacgaaatgaatactatgatgtcttgacaaatatcggt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7667 gtcgaatatatagatgattggaaacgaaatgaatactatgatgtcttgacaaatatcggt 7608
Query: 474 gatttacaacgtctagatttgggaaatatgttgaacggagatggagttagttttcccaag 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7607 gatttacaacgtctagatttgggaaatatgttgaacggagatggagttagttttcccaag 7548
Query: 534 -tacacagtgatcta-ccaacctacctagattcagacttatcgattatgaaaatgaaatg 591
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7547 ttacacagtgatctagccaacctacctagattcagacttatcgataatgaaaatgaaatg 7488
Query: 592 gatcaaagtctcctacttaagtttgacttttttaaggaccagact-attgaaaaatgcag 650
|||||||||||||||| ||||| |||| | ||||||||| ||||| || |||||||||||
Sbjct: 7487 gatcaaagtctcctacataagtatgac-tctttaaggacaagactaatcgaaaaatgcag 7429
Query: 651 agcctttgagcttat-cgaagtgcaccaaattctgattgttattaccaggattttaattc 709
|||| |||||||||| ||||||||| ||||| ||||| | ||||||||||| | |||||
Sbjct: 7428 agccattgagcttatacgaagtgcaacaaatactgatgttaattaccaggatatcaattc 7369
Query: 710 cattgttttccggtgggggaacttgaaacattggcaagatgagattccaatgggaatgg- 768
|| |||| ||| || | ||||| ||| ||| |||| |||||||| ||||| |||||||
Sbjct: 7368 ca-tgttatcc-gttgtggaac-tgagacaatggcgagatgaga-tccaaatggaatgga 7313
Query: 769 aagaactgggctc-aaatcttgaattatttttg-aaacttggcctgttttaaca 820
||||||| ||||| |||||| |||||| ||||| |||||||||||| |||||||
Sbjct: 7312 aagaact-ggctcaaaatctcgaattaattttgaaaacttggcctgatttaaca 7260
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9147
Number of Sequences: 1807
Number of extensions: 9147
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)