BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZE01RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1582 1338 0.0
>3x_Contig1582
Length = 14087
Score = 1338 bits (675), Expect = 0.0
Identities = 726/739 (98%), Gaps = 3/739 (0%)
Strand = Plus / Minus
Query: 44 gcttcaatccatgaatctttgaacatttcgaccatggcctccacgtattctacacattgt 103
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 12052 gcttcaatccatgaatctttgaacatt-cgaccatggcctccacgtattctacacattgt 11994
Query: 104 gcatatgcaaatttcttcaaattctgacgagcttctttctcctcggtagggttcaatacc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11993 gcatatgcaaatttcttcaaattctgacgagcttctttctcctcggtagggttcaatacc 11934
Query: 164 caaattggtaatctttgattatgctttccaacgccctctgacatttctaaatgaataatc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11933 caaattggtaatctttgattatgctttccaacgccctctgacatttctaaatgaataatc 11874
Query: 224 tatctttgtggtgcagtattccagtactataagaacttctgacctatggttatggacaca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11873 tatctttgtggtgcagtattccagtactataagaacttctgacctatggttatggacaca 11814
Query: 284 gcagcagctacaaatgacaatacgctggctgttccccaaaatcgtttaaatcagttgaca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11813 gcagcagctacaaatgacaatacgctggctgttccccaaaatcgtttaaatcagttgaca 11754
Query: 344 ttgttcatttgcataatgttgagatttaaagctttttcatggatactttgaaaaatttcg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11753 ttgttcatttgcataatgttgagatttaaagctttttcatggatactttgaaaaatttcg 11694
Query: 404 aaggtttaaaagatttaataccatgaattacggtgggaaattggtaaaagccagccagta 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11693 aaggtttaaaagatttaataccatgaattacggtgggaaattggtaaaagccagccagta 11634
Query: 464 gcaccgttatacaaactgtttaagcagctcgttaggttctgtcatacccgggtcaattga 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11633 gcaccgttatacaaactgtttaagcagctcgttaggttctgtcatacccgggtcaattga 11574
Query: 524 atatctttgtttcatagagaaatgttcggtgcattcagagctacacaacctgcattaggt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11573 atatctttgtttcatagagaaatgttcggtgcattcagagctacacaacctgcattaggt 11514
Query: 584 ggattattatggaaagtcccatggcgtatgtctggtcctcaaaaagccagaacaagagac 643
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 11513 ggattattatggaaagtcccatggcgtatgtctggtcctcaaaaagcaagacaaagagac 11454
Query: 644 cgtttgagaagcgttgatgatgttctttcaactcttaagttaggtctttcatcttgaaaa 703
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 11453 cgtttgagaagcgttgatgatgttctttcaactcttaagttaggtc-ttcatcttgaaag 11395
Query: 704 gaaccatatggcggtttctgagggatctcaccttgatctacctaagattaaaccttgtgg 763
||||||||||||||||||||||||||||| || |||||| ||||||||||||| || |
Sbjct: 11394 aaaccatatggcggtttctgagggatctcagctgaatctacgtaagattaaacctcgt-g 11336
Query: 764 tgaagagcttacgtatttt 782
|||||||||||||||||||
Sbjct: 11335 tgaagagcttacgtatttt 11317
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7546
Number of Sequences: 1807
Number of extensions: 7546
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)