BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZE02FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1525 1546 0.0
>3x_Contig1525
Length = 8924
Score = 1546 bits (780), Expect = 0.0
Identities = 800/807 (99%)
Strand = Plus / Minus
Query: 88 gcgtgttttacagactgtgaacatgaaacatagagctttatcgaattataaaggtggtag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8906 gcgtgttttacagactgtgaacatgaaacatagagctttatcgaattataaaggtggtag 8847
Query: 148 attgtcgagtagaacagtcatcatgtaataccacacaagataggtctttgtatcagtaat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8846 attgtcgagtagaacagtcatcatgtaataccacacaagataggtctttgtatcagtaat 8787
Query: 208 tgtcttataatatttgaatcctgtaactattaaataactactctataaactaatgtcact 267
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8786 tgtcttataatatcggaatcctgtaactattaaataactactctataaactaatgtcact 8727
Query: 268 tgtatgcatgaaggaatccctggggtgatcccctgaaaaaagccgccagtatgagcctct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8726 tgtatgcatgaaggaatccctggggtgatcccctgaaaaaagccgccagtatgagcctct 8667
Query: 328 tatccaccatttcctgtattatgtcgttggcattgtactcaggaccataatgttctctat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8666 tatccaccatttcctgtattatgtcgttggcattgtactcaggaccataatgttctctat 8607
Query: 388 atctttggaataaggagacgtttttgtttttgatttctgtttcactctcagcaattcgag 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8606 atctttggaataaggagacgtttttgtttttgatttctgtttcactctcagcaattcgag 8547
Query: 448 acatgaacggtaaataccatctggaaatgtcttttaatttgtgtgttgctgaaaattcga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8546 acatgaacggtaaataccatctggaaatgtcttttaatttgtgtgttgctgaaaattcga 8487
Query: 508 gtgccaaattgttaataaaatctagttcaaatgcatcgctgttgtcttctgatttaaggc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8486 gtgccaaattgttaataaaatctagttcaaatgcatcgctgttgtcttctgatttaaggc 8427
Query: 568 gatagtcttttaaaacgccagtcttccttctggagctacgagtgtttccaagcattgtca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8426 gatagtcttttaaaacgccagtcttccttctggagctacgagtgtttccaagcattgtca 8367
Query: 628 gaacatttccttgaggtgagttattgactctagtcttgaggtattttatcatctcattaa 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8366 gaacatttccttgaggtgagttattgactctagtcttgaggtattttatcatctcattaa 8307
Query: 688 cgcaaatactaaccttatcatgggcgacaacattgacgtcttcgttatcattaaaacgta 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8306 cgcaaatactaaccttatcatgggcgacaacattgacgtcttcgttatcattaaaacgta 8247
Query: 748 aaaactgtttgcatttttcttccattaatgattgcatctgtttttcccatgggaatagag 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8246 aaaactgtttgcatttttcttccattaatgattgcatctgtttttcccatgggaatagag 8187
Query: 808 tgttatgatttatatccccaaggtgctccacatagttccacacaccgtcataggaagttt 867
|||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 8186 tgttatgatttatatcccaaaggtgctccacatagtcccacacaacgtcataggaagttt 8127
Query: 868 cttcatcattanaaattggatgctttg 894
||||||||||| ||||| |||||||||
Sbjct: 8126 cttcatcattagaaatttgatgctttg 8100
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5955
Number of Sequences: 1807
Number of extensions: 5955
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)