BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC24ZE02RM1.SCF screened BAC_end
         (907 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1251                                                        1528   0.0  

>3x_Contig1251 
          Length = 6331

 Score = 1528 bits (771), Expect = 0.0
 Identities = 849/870 (97%), Gaps = 4/870 (0%)
 Strand = Plus / Minus

                                                                        
Query: 40   gcttagatt-aatatcttcaatcttagatcccaagctggaagagtgagcgggntactagc 98
            ||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 3169 gcttagattcaatatcttcaatcatagatcccaagctggaagagtgagcggg-tactagc 3111

                                                                        
Query: 99   tgttcaacagtagatacgttttgcaattttacggtcttggaattttctctagttagatta 158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3110 tgttcaacagtagatacgttttgcaattttacggtcttggaattttctctagttagatta 3051

                                                                        
Query: 159  ccggacattgatagttgttgttcttttgataggttttccaagtgcaagatctctcgtgnt 218
            ||||||| ||||||||||||||||||||||||||||||||||||||||||| |   ||  
Sbjct: 3050 ccggacaatgatagttgttgttcttttgataggttttccaagtgcaagatcaccgttgta 2991

                                                                        
Query: 219  ttgacattatatgtgacttccataccctcttcatcgtgggtggcagatatgacgtggata 278
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2990 gtgacattatatgtgacttccataccctcttcatcgtgggtggcagatatgacgtggata 2931

                                                                        
Query: 279  ctgtcccatttagaatcatctgattcagctttcttgaaaagaatgactcccgcgaaatca 338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2930 ctgtcccatttagaatcatctgattcagctttcttgaaaagaatgactcccgcgaaatca 2871

                                                                        
Query: 339  gttgattcatcaacgtcccagagatacgttgaagtgtaaccaccctcgtagtataggtcc 398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2870 gttgattcatcaacgtcccagagatacgttgaagtgtaaccaccctcgtagtataggtcc 2811

                                                                        
Query: 399  ctatacaactcgaaagaattgttgcatgcaacttctagttctctcaatggctcactggga 458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2810 ctatacaactcgaaagaattgttgcatgcaacttctagttctctcaatggctcactggga 2751

                                                                        
Query: 459  aaaggactttctttcaaatcttcggcactcaattcagggaagtactggttagaccacggt 518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2750 aaaggactttctttcaaatcttcggcactcaattcagggaagtactggttagaccacggt 2691

                                                                        
Query: 519  gacctatgagaatcgatgtcacggttgtagtcgcaacataagaattctttgttgttagca 578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2690 gacctatgagaatcgatgtcacggttgtagtcgcaacataagaattctttgttgttagca 2631

                                                                        
Query: 579  tcggtatccttcttaatggtcaatgggatatcaattgaggaaagtaatccttctgcgatt 638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2630 tcggtatccttcttaatggtcaatgggatatcaattgaggaaagtaatccttctgcgatt 2571

                                                                        
Query: 639  tcaggctccaacgcaataaggttctgtaaatgggttttcacctttgttggatccaatctg 698
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2570 tcaggctccaacgcaataaggttctgtaaatgggttttcacctttgttggatccaatctg 2511

                                                                        
Query: 699  tataaaagctcgcaagcagcatcatatttctcgtccacagacattctagttccgtatctt 758
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2510 tataaaagctcgcaagcagcatcatatttctcgtccacagacattctagttccgtatctt 2451

                                                                        
Query: 759  cagtatatttacaactagttaccacgctcaaatgag-tttcttcagtttgcttgatgtat 817
            ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 2450 cagtatatttacaactagttaccacgctc-aatgagttttcttcagtttgcttgatgtat 2392

                                                                        
Query: 818  ttacatttcccctttctactcctttaatgattcctttcgtaggttttctttcaatacgaa 877
            |||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||||| 
Sbjct: 2391 ttacatttaccctttctactcctttaatgatttctttcgtagttttcctttcaatacgat 2332

                                          
Query: 878  cgatgaaatttttctattgacagactttgc 907
            |||||| ||||||||||||| |||| ||||
Sbjct: 2331 cgatgatatttttctattgagagacattgc 2302


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6919
Number of Sequences: 1807
Number of extensions: 6919
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)