BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZE03FM1.SCF screened BAC_end
(812 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1639 502 e-142
>3x_Contig1639
Length = 14140
Score = 502 bits (253), Expect = e-142
Identities = 280/285 (98%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 89 accagaaagagaaatgtcaactttattaatcgtatctacttacgtaaatagcgagattca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4759 accagaaagagaaatgtcaactttattaatcgtatctacttacgtaaatagcgagattca 4700
Query: 149 aatatgagtaataaattattcaggtatagatgaagcctttctaacagtgtaaggaaatct 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4699 aatatgagtaataaattattcaggtatagatgaagcctttctaacagtgtaaggaaatct 4640
Query: 209 ttttgtgtatctaaccggtgcttatcatcatccggatgtcataacaagatggagggtgga 268
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4639 ttttgtgtatcgaaccggtgcttatcatcatccggatgtcataacaagatggagggtgga 4580
Query: 269 aac-aagac-aagccaatcaatgggtcacatgatcagattattgtttcttctattttacc 326
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4579 aacaaagacaaagccaatcaatgggtcacatgatcagattattgtttcttctattttacc 4520
Query: 327 taaaatgact-ctagtatcatcaatgattcaatgggagaaaaggg 370
|||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 4519 taaaatgactcctagtatcatcaatgattcaatggtagaaaaggg 4475
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,719
Number of Sequences: 1807
Number of extensions: 30719
Number of successful extensions: 1152
Number of sequences better than 1.0e-20: 1
length of query: 812
length of database: 10,358,551
effective HSP length: 16
effective length of query: 796
effective length of database: 10,329,639
effective search space: 8222392644
effective search space used: 8222392644
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)