BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZE03RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1041 1606 0.0
>3x_Contig1041
Length = 5356
Score = 1606 bits (810), Expect = 0.0
Identities = 843/850 (99%), Gaps = 3/850 (0%)
Strand = Plus / Minus
Query: 44 gcttcaccggctgtgataccgactaattctgtgccttgataggtgaaagaagcattgacc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 gcttcaccggctgtgataccgactaattctgtgccttgataggtgaaagaagcattgacc 883
Query: 104 aaggaaccaacccatcccaaaaatctggctttattgacatttttagcaatggtaccggta 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 aaggaaccaacccatcccaaaaatctggctttattgacatttttagcaatggtaccggta 823
Query: 164 ccccatgggccaggatttctccaataacggaacccaatagggccttgagaggtattttcc 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 822 ccccatgggccaggatttctccaataacggaacccaatagggccttgagaggaacca-cc 764
Query: 224 gcatacgatgatcagagcgtaaagtaggtagccaacaatggcaatgactttgatggaagc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gcatacgatgatcagagcgtaaagtaggtagccaacaatggcaatgactttgatggaagc 704
Query: 284 gacacaaaattcaaattcaccgtaccatttaactgggaaaaagtttgcagcagtgagtaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gacacaaaattcaaattcaccgtaccatttaactgggaaaaagtttgcagcagtgagtaa 644
Query: 344 aacccaaaagatggcaatccatgctgccaatggtaccgcatcggtccaataattgataat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aacccaaaagatggcaatccatgctgccaatggtaccgcatcggtccaataattgataat 584
Query: 404 ttgacccaaaacagaaagttccactgcgtaagtgatagcccaattaaaccagtacatgta 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttgacccaaaacagaaagttccactgcgtaagtgatagcccaattaaaccagtacatgta 524
Query: 464 accgttagctactccaaaagctggagataaaaatctctttgaaaatactgtaatcgaaga 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 accgttagctactccaaaagctggagataaaaatctctttgaaaatactgtaatcgaaga 464
Query: 524 agtgactggaatgaacgtagccatttcacccaacgattgggttacgaaatacactactga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agtgactggaatgaacgtagccatttcacccaacgattgggttacgaaatacactactga 404
Query: 584 tcccatgaaaatatatgcgatcaaagaaccgactggccctgaaagagaaagtggtttagc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tcccatgaaaatatatgcgatcaaagaaccgactggccctgaaagagaaagtggtttagc 344
Query: 644 aattccgacaaataaacccgtaccgatagtaccaccaagggcaatcatagacacatgtct 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aattccgacaaataaacccgtaccgatagtaccaccaagggcaatcatagacacatgtct 284
Query: 704 tggcttcaatgctcttttgacttctgtctcgtggaaatccccttccccttcctcgctttc 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tggcttcaatgctcttttgacttctgtctcgtggaaatccccttccccttcctcgctttc 224
Query: 764 cgcgtgatcgtataactcactagacacttggacatctgatagttctatgctatcttcacc 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 cgcgtgatcgtataactcactagacacttggacatctgatagttctatgctatcttcacc 164
Query: 824 ggctttggatcttttgcttaaag-tcctgagtctgtag-aaacatgcctttgattgattt 881
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 163 ggctttggatcttttgcttaaagttcctgagtctgtagaaaacatgcctttgattgattt 104
Query: 882 agtcactcca 891
||||||||||
Sbjct: 103 agtcactcca 94
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5922
Number of Sequences: 1807
Number of extensions: 5922
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)