BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZE05FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig234 696 0.0
>3x_Contig234
Length = 1152
Score = 696 bits (351), Expect = 0.0
Identities = 351/351 (100%)
Strand = Plus / Minus
Query: 86 caattggcacgaaacgatgttagacaaggatataattcgaagcggatgtttgaatggtaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 caattggcacgaaacgatgttagacaaggatataattcgaagcggatgtttgaatggtaa 292
Query: 146 tgtgttgaatgatttttcaaattccagtaaagcattgtggtagtctcctgatgaaaaata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgtgttgaatgatttttcaaattccagtaaagcattgtggtagtctcctgatgaaaaata 232
Query: 206 cttaacaccgttgttcttgaactcgttgaaactagttaattcaaagtctgatatcctgtg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 cttaacaccgttgttcttgaactcgttgaaactagttaattcaaagtctgatatcctgtg 172
Query: 266 ctgaggagatgcagatgtctgcggtgctgcaccaaaatcaaccaaagtttcctgattaat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ctgaggagatgcagatgtctgcggtgctgcaccaaaatcaaccaaagtttcctgattaat 112
Query: 326 aacggatgctgtatcttgattttccacagatacaggcggtggtgctgaagaagcattatt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 aacggatgctgtatcttgattttccacagatacaggcggtggtgctgaagaagcattatt 52
Query: 386 tatggatagttgatgaattgatggaagctccggacttggctgaggtgatgt 436
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 tatggatagttgatgaattgatggaagctccggacttggctgaggtgatgt 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7371
Number of Sequences: 1807
Number of extensions: 7371
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)