BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZE05RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1606 1689 0.0
>3x_Contig1606
Length = 11468
Score = 1689 bits (852), Expect = 0.0
Identities = 866/868 (99%), Gaps = 2/868 (0%)
Strand = Plus / Minus
Query: 47 ctggctgatatatccaggtttggtgatgtcttgtatgagaagccgaatgagaagttcata 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5873 ctggctgatatatccaggtttggtgatgtcttgtatgagaagccgaatgagaagttcata 5814
Query: 107 aaaccaactgcactcccgttgaagcttgatttggctatatgttctccggacaaagtcaaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5813 aaaccaactgcactcccgttgaagcttgatttggctatatgttctccggacaaagtcaaa 5754
Query: 167 cttgctaagctcattacaaatattcgtggttacgtggtcgatccggaaacatggacctga 226
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5753 cttgctaagctcattacaaatattcgtggttacgtggtcgatccggaaaca-ggacctga 5695
Query: 227 ttattcaaaattaaccacccctatatcttcagaggagaaaccagatttgaagaaaacgct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5694 ttattcaaaattaaccacccctatatcttcagaggagaaaccagatttgaagaaaacgct 5635
Query: 287 agatatcttatattcaaatactggaagaagatatcccaaccaattgttgagtatacccaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5634 agatatcttatattcaaatactggaagaagatatcccaaccaattgttgagtatacccaa 5575
Query: 347 tgagccatttgtatttttgaataatccggtaaagtactaccgaacgttatctggcaaagt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5574 tgagccatttgtatttttgaataatccggtaaagtactaccgaacgttatctggcaaagt 5515
Query: 407 taaagacatccacaggcgcgacttattcaagtggttatttttggaggatacagagagatt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5514 taaagacatccacaggcgcgacttattcaagtggttatttttggaggatacagagagatt 5455
Query: 467 taaaactcctgaaggcaattttacgggggaactttcctatagtaaaaggtttattgaatt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5454 taaaactcctgaaggcaattttacgggggaactttcctatagtaaaaggtttattgaatt 5395
Query: 527 tccatcgaataaacctacaattcaaattatcccatgtttattccaaaatcttacggagct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5394 tccatcgaataaacctacaattcaaattatcccatgtttattccaaaatcttacggagct 5335
Query: 587 accaaacgaaatgaatcattggcttagattacctgataaagagttcaaggagtctacaaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5334 accaaacgaaatgaatcattggcttagattacctgataaagagttcaaggagtctacaaa 5275
Query: 647 aagtaggatatcaacccttttccatggattttcaggcctataaatcaaagtgtcatgtct 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5274 aagtaggatatcaacccttttccatggattttcaggcctataaatcaaagtgtcatgtct 5215
Query: 707 tgacataatgcacggtaagtaagttctttctcttagaataaagtacacaagtttataaac 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5214 tgacataatgcacggtaagtaagttctttctcttagaataaagtacacaagtttataaac 5155
Query: 767 atttgtcagcaagacaaaattattgaggaaactgctctcttttcatgcatttgaattgtt 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5154 atttgtcagcaagacaaaattattgaggaaactgctctcttttcatgcatttgaattgtt 5095
Query: 827 cgaga-taataacatttcttgaatcagaaatgtggtgatgatgttcacttatttagcttt 885
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5094 cgagattaataacatttcttgaatcagaaatgtggtgatgatgttcacttatttagcttt 5035
Query: 886 gtgtgaacttcgtcgacaagtttctgat 913
||||||||||||||||||||||||||||
Sbjct: 5034 gtgtgaacttcgtcgacaagtttctgat 5007
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7234
Number of Sequences: 1807
Number of extensions: 7234
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)