BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZE11RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1150 0.0
>3x_Contig1654
Length = 17174
Score = 1150 bits (580), Expect = 0.0
Identities = 677/703 (96%), Gaps = 5/703 (0%)
Strand = Plus / Minus
Query: 45 gctttaatgacccgcttctgtcatctgtatagtacaaccacacaaaaccagaatatattt 104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8675 gctttaatgacccgcttctgtcaactgtatagtacaaccacacaaaaccagaatatattt 8616
Query: 105 atatatatatatatatctaattaattccttcattggattccaagttgttctcgcaacctt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8615 atatatatatatatatctaattaattccttcattggattccaagttgttctcgcaacctt 8556
Query: 165 tgattctctagttgcaacatattgatgcggttcgttgctgcttcagactccagttttctt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8555 tgattctctagttgcaacatattgatgcggttcgttgctgcttcagactccagttttctt 8496
Query: 225 ctttcacgttcaccaatccattttttccttaattcgtcaattttcagcttggattgtttc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8495 ctttcacgttcaccaatccattttttccttaattcgtcaattttcagcttggattgtttc 8436
Query: 285 tctacctcatcattctgtgatgagccggaccattcttctttttcgttcagaagcagatcg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8435 tctacctcatcattctgtgatgagccggaccattcttctttttcgttcagaagcagatcg 8376
Query: 345 acatgttctgtgacaattgattcgatggcagattcaataaaaaagaaaactgaatctaat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8375 acatgttctgtgacaattgattcgatggcagattcaataaaaaagaaaactgaatctaat 8316
Query: 405 tttgcaattgtctttttgaagaatttggcagagtctagctgttcaaggttatgcaactta 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8315 tttgcaattgtctttttgaagaatttggcagagtctagctgttcaaggttatgcaactta 8256
Query: 465 ttgaatgcttggtcaatggactctttttgtagaaccttctcgaatgacccaaaaattgcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8255 ttgaatgcttggtcaatggactctttttgtagaaccttctcgaatgacccaaaaattgcc 8196
Query: 525 cttaaatggtccaagagtntagattttataattgttaactgttgtgatcctttattcgca 584
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8195 cttaaatggtccaagagtttagattttataattgttaactgttgtgatcctttatccgca 8136
Query: 585 tctg-aaatttattaacgtgctcccgcagttttattatttcattttgt-aaatatgaggg 642
|||| |||||||||||||||||||||||||||||| ||||||| |||| |||||||| ||
Sbjct: 8135 tctgaaaatttattaacgtgctcccgcagttttataatttcatcttgtaaaatatgatgg 8076
Query: 643 tcgttccccaatt-tttcatttgtttttgaagaa-ct-gttattattcatgtagtatgtc 699
||||||||||||| || || ||||| ||| |||| || ||||| || |||||||||||||
Sbjct: 8075 tcgttccccaattcttccagttgttcttggagaagctggttatcatccatgtagtatgtc 8016
Query: 700 caatttcgcaaaacaattttcattttttttacgagttccatga 742
| ||||||||| || |||||| ||| || |||||||||||
Sbjct: 8015 gattttcgcaaagcagttttcaatttcttacggagttccatga 7973
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,857
Number of Sequences: 1807
Number of extensions: 25857
Number of successful extensions: 4245
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)