BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZE12FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1384 0.0
>3x_Contig1303
Length = 8112
Score = 1384 bits (698), Expect = 0.0
Identities = 765/784 (97%), Gaps = 3/784 (0%)
Strand = Plus / Plus
Query: 87 ttaacaaagtagttagctataaggatgtttccttctctctttgttttctgttgtaatcat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1773 ttaacaaagtagttagctataaggatgtttccttctctctttgttttctgttgtaatcat 1832
Query: 147 tcagtccttttacaaaaataatggaaacttcaacaaaatttcaacttctcttcaatttct 206
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1833 -cagtccttttacaaaaataatggaaacttcaacaaaatttcaacttctcttcaatttct 1891
Query: 207 tacttttttttgcagaatgtgacctggaagacaaacagatatatgtgagagcattcttat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892 tacttttttttgcagaatgtgacctggaagacaaacagatatatgtgagagcattcttat 1951
Query: 267 atctatatagacatgtctgtaaaaattgagtcttccaaaagtgtttcacgactgggtatg 326
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1952 atctatatagacatgtctgtaaaaattgagtcttccaaaagtgtt-cacgactgggtatg 2010
Query: 327 atagtgggacccgaatcaggttaggaggggctgtgtcatctatttttacatactatatgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 atagtgggacccgaatcaggttaggaggggctgtgtcatctatttttacatactatatgt 2070
Query: 387 atattatctatcatttacttatcgagccaggaatcttcctggttcaacgaaaatctagag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2071 atattatctatcatttacttatcgagccaggaatcttcctggttcaacgaaaatctagag 2130
Query: 447 acgatcttttcattgatattagggaagattactgagatatcgttagtcttcatcgtaacg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2131 acgatcttttcattgatattagggaagattactgagatatcgttagtcttcatcgtaacg 2190
Query: 507 cacacttgcaggcttggaaacacatttcccttccacaattgttgaattgaaagtgtgaca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2191 cacacttgcaggcttggaaacacatttcccttccacaattgttgaattgaaagtgtgaca 2250
Query: 567 aggatattttcaagtgattctgcggtgtaattgtctttatatatcgatggcatttcangt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2251 aggatattttcaagtgattctgcggtgtaattgtctttatatatcgatggcatttcaggt 2310
Query: 627 ggatataaaccgatggattttgctagaattggtctttatacagagtatggtagtttattt 686
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2311 ggatataaaccgatggattttgctagaattggtcttatcacagagtatggtagtttattt 2370
Query: 687 gaattgcgcggtatacagtagtattagaaaatagatcgcaaaaaggatctgaacgttata 746
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 2371 gaattgcgcggtatacagtagtataggaaaatagatcgcaaaagggatctgaacgttata 2430
Query: 747 atgggtagctttttcaatag-acaatcaacaatttagatgatttcagccacgattcgttc 805
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2431 atgggtagcttttccaatagaacaatcaacaatttagatgatttcagccacgattcgttc 2490
Query: 806 tcgtaaaaccagaagtttactctgttcaattnttcgtttttaaccggcatcacaagaact 865
||||||| ||||||||||||||||||||| | | |||||||||| | ||||||||| ||
Sbjct: 2491 tcgtaaagccagaagtttactctgttcaagtttccgtttttaacggcaatcacaagagct 2550
Query: 866 gtgt 869
||||
Sbjct: 2551 gtgt 2554
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7317
Number of Sequences: 1807
Number of extensions: 7317
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)