BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZF01FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1144 0.0
>3x_Contig1303
Length = 8112
Score = 1144 bits (577), Expect = 0.0
Identities = 641/656 (97%), Gaps = 5/656 (0%)
Strand = Plus / Plus
Query: 85 ttaacaaagtagttagctataaggatgtttccttctctctttgttttctgttgtaatcat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1773 ttaacaaagtagttagctataaggatgtttccttctctctttgttttctgttgtaatcat 1832
Query: 145 cagtccttttacaaaaataatggaaacttcaacaaaatttcaacttctcttcaatttctt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1833 cagtccttttacaaaaataatggaaacttcaacaaaatttcaacttctcttcaatttctt 1892
Query: 205 actttttttttcatan-gtgacctggaagacaaacagatatatgtgagagcattcttata 263
|||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1893 acttttttttgcagaatgtgacctggaagacaaacagatatatgtgagagcattcttata 1952
Query: 264 tctatatagacatgtctgtaaaaattgagtcttccaaaagtgtttcacgactgggtatga 323
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1953 tctatatagacatgtctgtaaaaattgagtcttccaaaagtgtt-cacgactgggtatga 2011
Query: 324 tagtgggacccgaatcaggttaggaggggctgtgtcatctatttttacatactatatgta 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2012 tagtgggacccgaatcaggttaggaggggctgtgtcatctatttttacatactatatgta 2071
Query: 384 tattatctatcatttacttatcgagccaggaatcttcctggttcaacgaaaatctagaga 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2072 tattatctatcatttacttatcgagccaggaatcttcctggttcaacgaaaatctagaga 2131
Query: 444 cgatcttttcattgatattagggaagattactgagatatcgttagtcttcatcgtaacgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2132 cgatcttttcattgatattagggaagattactgagatatcgttagtcttcatcgtaacgc 2191
Query: 504 acacttgcaggcttggaaacacatttcccttccacaattgttgaattgaaagtgtgacaa 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 acacttgcaggcttggaaacacatttcccttccacaattgttgaattgaaagtgtgacaa 2251
Query: 564 ggatattttcaagtgattctgcggtgtaattgtctttatatatcgatggcatttcaggtg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 ggatattttcaagtgattctgcggtgtaattgtctttatatatcgatggcatttcaggtg 2311
Query: 624 gatataaaccgatggattttgctagaattggtcttatcacagagaagggtagtttatttg 683
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 2312 gatataaaccgatggattttgctagaattggtcttatcacagagtatggtagtttatttg 2371
Query: 684 aattgcgccggtatacagtaattataagaaaaaagaatccgaaaagggatctgaac 739
|||||||| ||||||||||| | ||| ||||| ||| || |||||||||||||||
Sbjct: 2372 aattgcgc-ggtatacagtagt-ataggaaaataga-tcgcaaaagggatctgaac 2424
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9049
Number of Sequences: 1807
Number of extensions: 9049
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)