BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZF05FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1312 1604 0.0
>3x_Contig1312
Length = 5472
Score = 1604 bits (809), Expect = 0.0
Identities = 837/844 (99%), Gaps = 2/844 (0%)
Strand = Plus / Plus
Query: 85 cgaaccaaaagaagcctcgaaccaaaagagttttgcctgaaaaccaagcggtttcacttt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3929 cgaaccaaaagaagcctcgaaccaaaagagttttgcctgaaaaccaagcggtttcacttt 3988
Query: 145 ctacagatcgaccttccttgcacgctttcaccgcaagcaacagtacctacacgacgtact 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3989 ctacagatcgaccttccttgcacgctttcaccgcaagcaacagtacctacacgacgtact 4048
Query: 205 tccgatttattcgagcagagatattgatagcctttgttttttgtcgttaagatttgaaaa 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4049 tccgatttattcgagcagagatattgatagcctttgttttttgtcgttaagatttgaaaa 4108
Query: 265 caaaaaaaaaggattttcccaattactttcccacagaaaaagtcgtgcaataaagattcg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4109 caaaaaaaaaggattttcccaattactttcccacagaaaaagtcgtgcaataaagattcg 4168
Query: 325 tacacttgttcccctaaaagcgtcgtatacgattttcccttgacaccaatatagttagta 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4169 tacacttgttcccctaaaagcgtcgtatacgattttcccttgacaccaatatagttagta 4228
Query: 385 caagagaagaaataattactctcagtgctgaacaaactcggagataggactatcgcacaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4229 caagagaagaaataattactctcagtgctgaacaaactcggagataggactatcgcacaa 4288
Query: 445 tcaaagtaatacaggttggtgtcgtcttcctcatatattcatttggttgaagtacttgag 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4289 tcaaagtaatacaggttggtgtcgtcttcctcatatattcatttggttgaagtacttgag 4348
Query: 505 cttacattggtttttttgttgttcactttcaggctgacatcttggcatgctttctgttcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4349 cttacattggtttttttgttgttcactttcaggctgacatcttggcatgctttctgttcc 4408
Query: 565 taaacctccaactgaacctaatactggaggaacacccttgagaagaggccacagacataa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4409 taaacctccaactgaacctaatactggaggaacacccttgagaagaggccacagacataa 4468
Query: 625 aagatcgtttgcaatttcgggtgactttgaattcttaaaaaaggaccctcttcgagacgc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4469 aagatcgtttgcaatttcgggtgactttgaattcttaaaaaaggaccctcttcgagacgc 4528
Query: 685 gacttttccaattggttcagaagccaattatgcggtggattctagagacgcaactccagt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4529 gacttttccaattggttcagaagccaattatgcggtggattctagagacgcaactccagt 4588
Query: 745 gtctgtgtgtgatgtagcagagttgaagacagacctgacgtttaatacagctagatctgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4589 gtctgtgtgtgatgtagcagagttgaagacagacctgacgtttaatacagctagatctgc 4648
Query: 805 atctactcactttttaacaagccccanattctttatcaccgaaggacccaaatttactgg 864
|||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||
Sbjct: 4649 atctactcactttttaacaagccccagattctttatcaccgaagaaccaaaattcactgg 4708
Query: 865 ttggattcaaagacgttccggacgccttaatcaatttggacgatgcgtttgaaaacgcgg 924
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 4709 -tggattcaaagacgttccggacgccataatcaatttggacgatgcg-ttgaaaacgcgg 4766
Query: 925 ccca 928
||||
Sbjct: 4767 ccca 4770
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6580
Number of Sequences: 1807
Number of extensions: 6580
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)