BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZF07FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig978 1304 0.0
>3x_Contig978
Length = 3477
Score = 1304 bits (658), Expect = 0.0
Identities = 667/670 (99%)
Strand = Plus / Plus
Query: 87 cgtgttgctctttagcaaagtcattgcaaagtcgatgtttttcaattcacgaccaggaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2801 cgtgttgctctttagcaaagtcattgcaaagtcgatgtttttcaattcacgaccaggaat 2860
Query: 147 tctcaagtctctaggaatggtcgagccaacggtgtaaacaatagcatcgaacttagattt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2861 tctcaagtctctaggaatggtcgagccaacggtgtaaacaatagcatcgaacttagattt 2920
Query: 207 caattcctcaacggagatatctttaccaacctcagtgtttgtgatgaattgaacaccttc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2921 caattcctcaacggagatatctttaccaacctcagtgtttgtgatgaattgaacaccttc 2980
Query: 267 ggctgctaatagatccaaacgtctttgaacaattgacttgtccaatttcatatttggaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2981 ggctgctaatagatccaaacgtctttgaacaattgacttgtccaatttcatatttggaat 3040
Query: 327 accgtacatcaacaaaccaccgcaacgatcagccctctcgtaaacaactactgaatgacc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3041 accgtacatcaacaaaccaccgcaacgatcagccctctcgtaaacaactactgaatgacc 3100
Query: 387 agctctgttcaattggtctgcgcaagccatacctgcagggccagagccgataacggcaac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3101 agctctgttcaattggtctgcgcaagccatacctgcagggccagagccgataacggcaac 3160
Query: 447 aatcttacctgttctgacttcaggtggacaaggtttaatccatccttctttgaaagcgtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3161 aatcttacctgttctgacttcaggtggacaaggtttaatccatccttctttgaaagcgtt 3220
Query: 507 atcgataatcaatctttcaacagacttgatgccgactggatcgtcaatgatagccaaggt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3221 atcgataatcaatctttcaacagacttgatgccgactggatcgtcaatgatagccaaggt 3280
Query: 567 acaagaaccttgacatggagcgggacaaactctaccagtaaattcagggaaattgttagt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3281 acaagaaccttgacatggagcgggacaaactctaccagtaaattcagggaaattgttagt 3340
Query: 627 ttccaatagtttgtccaatgctaatttccattggtttttgaacacaagctcattgaattt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3341 ttccaatagtttgtccaatgctaatttccattggtttttgaacacaagctcattgaattt 3400
Query: 687 tgggataatattggaaattggacatcccgtatctgatgtacagaatggaacaccacagtc 746
|||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct: 3401 tgggataatattggaaatagaacatcccgtatctgatgtacagaatgtaacaccacagtc 3460
Query: 747 catacatcta 756
||||||||||
Sbjct: 3461 catacatcta 3470
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6176
Number of Sequences: 1807
Number of extensions: 6176
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)