BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZF07RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1322 1554 0.0
>3x_Contig1322
Length = 7535
Score = 1554 bits (784), Expect = 0.0
Identities = 856/874 (97%), Gaps = 5/874 (0%)
Strand = Plus / Minus
Query: 48 tagcaatgattaataaaaggttccaagaagagttgtactattctcagttcaggtgaacga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1853 tagcaatgattaataaaaggttccaagaagagttgtactattctcagttcaggtgaacga 1794
Query: 108 gattataagaggagaatacacttcgttgaaaatgttggctattggcataggttttcatac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1793 gattataagaggagaatacacttcgttgaaaatgttggctattggcataggttttcatac 1734
Query: 168 catttaagaatttttgtattctaagtttttaaacatcgtcaatatatgtacatatatata 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1733 catttaagaatttttgtattctaagtttttaaacatcgtcaatatatgtacatatatata 1674
Query: 228 tccaacatatgccatcaccctagtgatagatcagaatttataaaagtgtaatagtatcgt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1673 tccaacatatgccatcaccctagtgatagatcagaatttataaaagtgtaatagtatcgt 1614
Query: 288 tagaatttgtcgtagtgtaaaagccatgacgcacccgacatagagtaaagataatgagaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1613 tagaatttgtcgtagtgtaaaagccatgacgcacccgacatagagtaaagataatgagaa 1554
Query: 348 aagtagagtaagaagaacatatgcatagaagaaaaaagataataatcatgaagttatgtc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 aagtagagtaagaagaacatatgcatagaagaaaaaagataataatcatgaagttatgtc 1494
Query: 408 gagggaaggaaagcagtgttttgttttgcatggtttagaagccttttcgaaaatgcagag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1493 gagggaaggaaagcagtgttttgttttgcatggtttagaagccttttcgaaaatgcagag 1434
Query: 468 caacggaagagcttgtaatagataaataagagcaggaaattcagatatgacataatgaga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1433 caacggaagagcttgtaatagataaataagagcaggaaattcagatatgacataatgaga 1374
Query: 528 cgttataaatagaatagaagggaattgagaacagggataaatatggacaggcacacaacg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 cgttataaatagaatagaagggaattgagaacagggataaatatggacaggcacacaacg 1314
Query: 588 tgtgtttattttaaattcccatataccacttcattctttcatatacgaagaacgaacatg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1313 tgtgtttattttaaattcccatataccacttcattctttcatatacgaagaacgaacatg 1254
Query: 648 cgaccattggtgtgaccttgatgtaaccgatactcanaccaacgnaaaaacctctccatc 707
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 1253 cgaccattggtgtgaccttgatgtaaccgatactcaaaccaacgaaaaaacctctccatc 1194
Query: 708 cacgttcgtggaagattattttcgccatctcagacatggatgtaaatttatgctcaagcn 767
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 cacgttcgtggaagataattttcgccatctcagacatggatgtaaatttatgctcaagc- 1135
Query: 768 ggatttgtcacagcaccgacttgtagacgtttcctattaatttc-aatgggtatgccgct 826
||||| |||||||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct: 1134 ggattggtcacagcaccgacttgtagacgtctcctaataatttcaaatgggtatgccgct 1075
Query: 827 g-ttggggagccttaccggccaattcacc-gcttatatttctgcccaagt-ttcaatgga 883
| ||||| |||| ||||||||||| |||| ||| ||| |||||||||||| |||||||||
Sbjct: 1074 gtttgggaagccataccggccaatccaccagctaatagttctgcccaagtattcaatgga 1015
Query: 884 attcttttccccgttcgagtagtttgaacatcca 917
||||||||||||||||||||||| || |||||||
Sbjct: 1014 attcttttccccgttcgagtagtctgtacatcca 981
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7272
Number of Sequences: 1807
Number of extensions: 7272
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)