BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZF08FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1103 1564 0.0
>3x_Contig1103
Length = 3850
Score = 1564 bits (789), Expect = 0.0
Identities = 834/845 (98%), Gaps = 3/845 (0%)
Strand = Plus / Plus
Query: 87 cagtagccagtatatgagaattgttaaaggaattgtaataatagcgaggaatctttcagt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cagtagccagtatatgagaattgttaaaggaattgtaataatagcgaggaatctttcagt 481
Query: 147 tgcaaatcaggttatacctcaaaatattctactacctaacacattcctggcatggtattt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgcaaatcaggttatacctcaaaatattctactacctaacacattcctggcatggtattt 541
Query: 207 atccatttccagacaaactgtgtgtacgcctggtgatttgaagcaattatatggtctagt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atccatttccagacaaactgtgtgtacgcctggtgatttgaagcaattatatggtctagt 601
Query: 267 atgtcaattttacttcaattgcacccgaactaatgttgtctttgatgagagctgttttga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 atgtcaattttacttcaattgcacccgaactaatgttgtctttgatgagagctgttttga 661
Query: 327 tgatcatatgaatttcatggtagaaatgctgcggtttattgatgatgatggcattgttaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tgatcatatgaatttcatggtagaaatgctgcggtttattgatgatgatggcattgttaa 721
Query: 387 tgcgtactctctgtggctctcaaatataatgaaaagtgatgcattcatctcatctttact 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tgcgtactctctgtggctctcaaatataatgaaaagtgatgcattcatctcatctttact 781
Query: 447 caatgatattagatctttggaagttatcgacaaactactactgcggggaataattgcaca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 caatgatattagatctttggaagttatcgacaaactactactgcggggaataattgcaca 841
Query: 507 gaaaactgagattgacttgctcgttgaagaggaagatgaggataaaaatctttcttcctt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gaaaactgagattgacttgctcgttgaagaggaagatgaggataaaaatctttcttcctt 901
Query: 567 agctactattcaactaaaaatattaaaacagttagtaacacatgaatgcttcgggtctta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 agctactattcaactaaaaatattaaaacagttagtaacacatgaatgcttcgggtctta 961
Query: 627 tatgaaaaccttacgaaaagaatatggttttgcttctttcaacaaaatgttcaagattgt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 tatgaaaaccttacgaaaagaatatggttttgcttctttcaacaaaatgttcaagattgt 1021
Query: 687 cacaatgttggtgaccagttcagaaagatgggacctttatcagttgactgcaattctaag 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 cacaatgttggtgaccagttcagaaagatgggacctttatcagttgactgcaattctaag 1081
Query: 747 ctggacttttgatattttcggagaatatacatatctagtggatgctttcttttaatcaga 806
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 1082 ctggacttttgatattttcgaagaatatacatatctagtggatgctttctttaaatcaga 1141
Query: 807 gtccactccagaagccactgatgccggcccactttttgcgatattgttctcggttcttga 866
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1142 gtccactccagaagcaactgatgccggcccactttttgcgatattgtcctcggttcttga 1201
Query: 867 tattct-actacacttgcaaattacc-acatgcacagaaatac-tgaatttctatgatgg 923
|||||| |||||||||||||| |||| |||||||||||||||| ||| || ||||||||
Sbjct: 1202 tattctaactacacttgcaaaataccaacatgcacagaaatacatgatttcttatgatgg 1261
Query: 924 ggtgc 928
|||||
Sbjct: 1262 ggtgc 1266
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8125
Number of Sequences: 1807
Number of extensions: 8125
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)