BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZF09RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1183 0.0
>3x_Contig1791
Length = 39945
Score = 1183 bits (597), Expect = 0.0
Identities = 785/836 (93%), Gaps = 9/836 (1%)
Strand = Plus / Plus
Query: 49 agttctttgctgttgagaaagatcaccgtgaatggcagcaacatcgtaaccgttgtattt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6326 agttctttgctgttgagaaagatcaccgtgaatggcagcaacatcgtaaccgttgtattt 6385
Query: 109 cgaagtttctttcaacacgagaggcttcctttttgtacaaggcaaatatcaaaactttgt 168
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6386 c-aagtttctttcaacacgagaggcttcctttttgtacaaggcaaatatcaaaactttgt 6444
Query: 169 cgttctttgttgggcctgaatggtacttcttcaacagttccaacagttttttttcctttc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6445 cgttctttgttgggcctgaatggtacttcttcaacagttccaacagttttttttcctttc 6504
Query: 229 tgaacggatccacaacttccacgatctgagtaattcttttgtttgctgacagttcatctc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6505 tgaacggatccacaacttccacgatctgagtaattcttttgtttgctgacagttcatctc 6564
Query: 289 tgttaccaatagacactttaaccggttcactcatgaaacttgaagcaagttcacgaactt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6565 tgttaccaatagacactttaaccggttcactcatgaaacttgaagcaagttcacgaactt 6624
Query: 349 cttttggccatgtcgcggtaaacatcaacgtttgtctagaggtggatcttgtttgtctaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6625 cttttggccatgtcgcggtaaacatcaacgtttgtctagaggtggatcttgtttgtctaa 6684
Query: 409 tgatttttttgatatcttcctcaaaacctttttccaacattctgtcagcttcatccaaga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6685 tgatttttttgatatcttcctcaaaacctttttccaacattctgtcagcttcatccaaga 6744
Query: 469 ccaggtagttaacatgactcanatcaacagagccttcctctattagatccaacagtctac 528
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 6745 ccaggtagttaacatgactcaaatcaacagagccttcctctattagatccaacagtctac 6804
Query: 529 ctggagtagcaacaacgacttgggatctcctcagatcttctctttgctgatccttttgga 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 6805 ctggagtagcaacaacgacttgggatctcctcagatcttctctttgctgatcctttggaa 6864
Query: 589 caccaccgtatacgcaacaagatctttaaccacacgcgttagttagaacaataaaattat 648
|||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||||||
Sbjct: 6865 caccaccgtatacgcaacaagatcttaaaccacacgcgtcagtaagaacaatcaaattat 6924
Query: 649 ctaaaatttgggaggccatttttctaattggttgagataacaagtaccttgaacggactt 708
| ||||||| ||||||| || |||| ||||| ||||||||||||||||||| |||| |
Sbjct: 6925 cgtaaatttgagaggccaattctctagttggt-gagataacaagtaccttga-cggaact 6982
Query: 709 tgacttggcttcctgatgtgaacatggttgttgatagcttgaaacacccaaaggcaaatt 768
||||||| || |||||||||| ||| |||||||||||| ||| |||| |||| ||| |
Sbjct: 6983 tgacttgtct-cctgatgtgacaatg-ttgttgatagctggaa-caccgaaagcaaaagt 7039
Query: 769 cttacccggaaccacttttcacgattcccgttacatccttaccagctttttaaatatggc 828
|||||||| ||||| ||| |||| || | ||||||||||||||| | | |||||||
Sbjct: 7040 cttacccg-aaccagtttcagcgataccgataacatccttaccagctaat-agatatggc 7097
Query: 829 caggaaaacacttgaatttggaattggtttttggaactctaaaatttccttttgaa 884
||||||| |||||||| ||| |||||||| |||||| |||||||||||||||
Sbjct: 7098 caggaaacagcttgaatt-ggagttggttttgggaacttagaaatttccttttgaa 7152
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8128
Number of Sequences: 1807
Number of extensions: 8128
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)