BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZF11FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1580 1558 0.0
>3x_Contig1580
Length = 11743
Score = 1558 bits (786), Expect = 0.0
Identities = 833/843 (98%), Gaps = 5/843 (0%)
Strand = Plus / Plus
Query: 87 gaatgcatcatcatcttttatcgtacgattgtgtgaggagggaagaggatataaagccaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9229 gaatgcatcatcatcttttatcgtacgattgtgtgaggagggaagaggatataaagccaa 9288
Query: 147 agcgacaacaaaggtcatctgatttggaaaatcaatttggaccagcatctctaggattga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9289 agcgacaacaaaggtcatctgatttggaaaatcaatttggaccagcatctctaggattga 9348
Query: 207 caaaaccagatgagaaggatgacttgactgtccattcaaacccaatatttgacgatccta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9349 caaaaccagatgagaaggatgacttgactgtccattcaaacccaatatttgacgatccta 9408
Query: 267 ttggcagttatgggaagagttcaggtgcccgctttattagagataagttaaggtcaaata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9409 ttggcagttatgggaagagttcaggtgcccgctttattagagataagttaaggtcaaata 9468
Query: 327 tatctttgcatgatgttatatccaatccagcggtggcgaccactatttcaaaagatgatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9469 tatctttgcatgatgttatatccaatccagcggtggcgaccactatttcaaaagatgatt 9528
Query: 387 cgatcgatgctgaatctactgaaggagattctgaaagaaaaccaaaagtacctgcatttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9529 cgatcgatgctgaatctactgaaggagattctgaaagaaaaccaaaagtacctgcatttg 9588
Query: 447 cacaattgggtgataacataacggaactattcaatacagtggcatccacattttcaaaaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9589 cacaattgggtgataacataacggaactattcaatacagtggcatccacattttcaaaaa 9648
Query: 507 aatcgtcagctacattgcgattgggttcagctgacgaaagtgtgtatgacactcatttct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9649 aatcgtcagctacattgcgattgggttcagctgacgaaagtgtgtatgacactcatttct 9708
Query: 567 tggaaacaaaggtcccaagtgagatcaattcgttcgacatcagtccagtgtcaccgctca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9709 tggaaacaaaggtcccaagtgagatcaattcgttcgacatcagtccagtgtcaccgctca 9768
Query: 627 accttcaaggtgggccatcaacagctgcttcattatctccaagatcaccaatggcaatcc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9769 accttcaaggtgggccatcaacagctgcttcattatctccaagatcaccaatggcaatcc 9828
Query: 687 ctgcccagagtgcggttactccattgactgcaaatactgctggtacagcttcaacgaagc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9829 ctgcccagagtgcggttactccattgactgcaaatactgctggtacagcttcaacgaagc 9888
Query: 747 ctagttggtttgatttttc-aataangattctagttggtattcattgaagttcaaaaatt 805
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9889 ctagttggtttgatttttcaaataaggattctagttggtattcattgaagttcaaaaatt 9948
Query: 806 c-aaggaaacatcaactagcggatgatcaaccagttttt-ttttttaacattnccagtga 863
| ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 9949 caaaggaaacatcaactagcggatgatcaaccagtttttctttttaaacatttccagtga 10008
Query: 864 ttaga-catcgancggtagtcatctacaaagga-ttttttggtaacatgattagtgaggt 921
||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 10009 ttagaccatcgagcggtagtcatctacaaaggatttttttggtaacatgaatagtgaggt 10068
Query: 922 cat 924
|||
Sbjct: 10069 cat 10071
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,669
Number of Sequences: 1807
Number of extensions: 11669
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)