BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZF11RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig625 944 0.0
>3x_Contig625
Length = 2660
Score = 944 bits (476), Expect = 0.0
Identities = 501/511 (98%), Gaps = 10/511 (1%)
Strand = Plus / Plus
Query: 49 aataaataataccttaatatctgatactacaaattgttctttatgctttgggttggataa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 aataaataataccttaatatctgatactacaaattgttctttatgctttgggttggataa 145
Query: 109 acctccgcttcttcacgactcatttcggttgccatgcatcagtaaaggtcgttttctttt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 acctccgcttcttcacgactcatttcggttgccatgcatcagtaaaggtcgttttctttt 205
Query: 169 ccttcctttaggtccactcttagcgagcctaatccaatatcaacaatttacactgctgct 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ccttcctttaggtccactcttagcgagcctaatccaatatcaacaatttacactgctgct 265
Query: 229 gctgctgctaccactactagcacgactgcattgagctaacgacactcctcttgttcgtcg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gctgctgctaccactactagcacgactgcattgagctaacgacactcctcttgttcgtcg 325
Query: 289 ttcttactcactctttctctcctctcttatctgactcgcgcaagtacccttatcgttatc 348
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 326 ttcttactcactctttctctcctctcttatctgac----------acccttatcgttatc 375
Query: 349 atgatacagcttcttcttcatcttctaggcgaggaattggtcgaaacggaaaaaagaaaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atgatacagcttcttcttcatcttctaggcgaggaattggtcgaaacggaaaaaagaaaa 435
Query: 409 attttcgctgggaaaagctttcgttgcttggtttaatggaagggcattatctttggcact 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 attttcgctgggaaaagctttcgttgcttggtttaatggaagggcattatctttggcact 495
Query: 469 ttgcgcaactgttaagcgagctataggtaaaagtcggaacggagagggccttgaaaagtg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttgcgcaactgttaagcgagctataggtaaaagtcggaacggagagggccttgaaaagtg 555
Query: 529 gtaactcgcttagcattgagtgatgatagtt 559
|||||||||||||||||||||||||||||||
Sbjct: 556 gtaactcgcttagcattgagtgatgatagtt 586
Score = 325 bits (164), Expect = 9e-89
Identities = 240/259 (92%), Gaps = 5/259 (1%)
Strand = Plus / Plus
Query: 594 tattattattttcttttttttttccctttgcgggtcttgtttcctgacggagatcactct 653
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 611 tattattattttcttttttttttccctttgcggttcttgtttcctgacggagatcactct 670
Query: 654 tttactaacagagttgttttgatgcttgtgcaaatattttgataagttgattgacccnaa 713
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 671 ttcactaacagagttgttttgatgcttgtgcaaatattttgataagttgattgaccggac 730
Query: 714 cagaccccctttagggaacggtcttctttctttttccgg-tttcatttgcataaagtttc 772
|||||| |||| ||||||||||| ||||||||||||||| |||||||||||| |||||||
Sbjct: 731 cagaccgccttaagggaacggtc-tctttctttttccggttttcatttgcat-aagtttc 788
Query: 773 cattcgagccaacaaatttaaaatgagatgtgggtgtttggggtgttaataggaaagaat 832
|||||||| |||||||| | ||||||||||||||||||| ||||||||||||||| ||
Sbjct: 789 cattcgag-caacaaatatgaaatgagatgtgggtgttt-gggtgttaataggaatgata 846
Query: 833 tttgctttaagtaatttca 851
||||| |||||| ||||||
Sbjct: 847 tttgcattaagttatttca 865
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,775
Number of Sequences: 1807
Number of extensions: 10775
Number of successful extensions: 350
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)