BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZG01FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1145 1203 0.0
>3x_Contig1145
Length = 5226
Score = 1203 bits (607), Expect = 0.0
Identities = 668/680 (98%), Gaps = 7/680 (1%)
Strand = Plus / Plus
Query: 88 aattcttttggcaagttgcatgacaagacttgtattattaccgttggatctcgtcagagt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3150 aattcttttggcaagttgcatgacaagacttgtattattaccgttggatctcgtcagagt 3209
Query: 148 taggttaattatctcttctgttcgtaacgatggttccctttctgataacgataga-tcct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3210 taggttaattatctcttctgttcgtaacgatggttccctttctgataacgatagaatcct 3269
Query: 207 taagaaaa-ttgttgagaaaatggtcctggagggaaaaca-tatccaaactaaataagga 264
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3270 taagaaaaattgttgagaaaatggtcctggagggaaaacactatccaaactaaataagga 3329
Query: 265 attggtctttttgaatatattatattccctggtagggacaggatttagcaaattaaccgg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3330 attggtctttttgaatatattatattccctggtagggacaggatttagcaaattaaccgg 3389
Query: 325 tgcaatactatatcatcagttcaatgttgacaaattcactaatgtgattctgtacaa-ca 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3390 tgcaatactatatcatcagttcaatgttgacaaattcactaatgtgattctgtacaaaca 3449
Query: 384 cattaaagttctgcagtaaagtttgtgaactcttcgtaaagctaccaattgagaatctat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3450 cattaaagttctgcagtaaagtttgtgaactcttcgtaaagctaccaattgagaatctat 3509
Query: 444 tgagaaggagtcaagtgaagttcttgttcacagaaaacccattccaagtacaatctgaaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3510 tgagaaggagtcaagtgaagttcttgttcacagaaaacccattccaagtacaatctgaaa 3569
Query: 504 tgttaatcataaaaccaagggagtaccaatccatctacctgacggtattcaagcagtgcg 563
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3570 tgttaatcataaaaccaagggagtaccaatccatctac-tgacggtattcaagcagtgcg 3628
Query: 564 acagaattagtgaactatggcgaggctggagactcgggcttctaagcattntatgcggtt 623
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3629 acagaattagtgaactatggcgaggctggagactcgggcttctaagcattttatgcggtt 3688
Query: 624 atggtttgaagattttaaataagccatcagaaatactcgaagaggagaagntttagttca 683
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3689 atggtttgaagattttaaataagccatcagaaatactcgaagaggagaagttttagttca 3748
Query: 684 tgtagatatctataagtgaactggacattgaaagaaaacatacatatattaaaatantat 743
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 3749 tgtagatatctataagtgaactggacattgaaggaaaacatacatata-taaaataataa 3807
Query: 744 taataattacagatgtcttt 763
|||||| |||||||||||||
Sbjct: 3808 taataa-tacagatgtcttt 3826
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6858
Number of Sequences: 1807
Number of extensions: 6858
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)