BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZG02FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1246 1540 0.0
>3x_Contig1246
Length = 5473
Score = 1540 bits (777), Expect = 0.0
Identities = 840/855 (98%), Gaps = 6/855 (0%)
Strand = Plus / Minus
Query: 87 caaatcgtttgcatgccatttcttgttttctataagcaaggaacgtcagtttcttaagta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4595 caaatcgtttgcatgccatttcttgttttctataagcaaggaacgtcagtttcttaagta 4536
Query: 147 tcgacaccgaaaacgtcaaaaagacacaatgtgctaggtaagaatagaagtatataagtg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4535 tcgacaccgaaaacgtcaaaaagacacaatgtgctaggtaagaatagaagtatataagtg 4476
Query: 207 agcatgatgcattttcctcgcgcggaaaagaatcattatacaaatttcagctgtgtggag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4475 agcatgatgcattttcctcgcgcggaaaagaatcattatacaaatttcagctgtgtggag 4416
Query: 267 ttgttgtcgtggtttgatcaatccttagtaagcatatggtcctgtaagatatgacagaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4415 ttgttgtcgtggtttgatcaatccttagtaagcatatggtcctgtaagatatgacagaat 4356
Query: 327 ttcatggagtgacagagtccgaaaacaatgaggaaactagaatatacaatttcgcagaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4355 ttcatggagtgacagagtccgaaaacaatgaggaaactagaatatacaatttcgcagaca 4296
Query: 387 ctatgagaagattattagcactgcctgactataccgcaaggtatttccatttttcaacta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4295 ctatgagaagattattagcactgcctgactataccgcaaggtatttccatttttcaacta 4236
Query: 447 gtgatacccataataacagtacagaaccacaggatcgcaatgaacaacaatcacatgtgc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4235 gtgatacccataataacagtacagaaccacaggatcgcaatgaacaacaatcacatgtgc 4176
Query: 507 gttggaaaatccagaaattacaatgatattgtcaaaactgcttcagtttggcaattaatg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4175 gttggaaaatccagaaattacaatgatattgtcaaaactgcttcagtttggcaattaatg 4116
Query: 567 ttcagcagctgaggaagtgagccctagtatagacaatatttcattactttaatataaaat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4115 ttcagcagctgaggaagtgagccctagtatagacaatatttcattactttaatataaaat 4056
Query: 627 cagtcaagtcatgatgtatatttaaaataatagatataaaataaaaacgaactacaagga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4055 cagtcaagtcatgatgtatatttaaaataatagatataaaataaaaacgaactacaagga 3996
Query: 687 actttgagaccttatcccttgaaaggaatcgctggagataaaa--aaaaaaaagcagcga 744
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3995 actttgagaccttatcccttgaaaggaatcgctggagataaaaaaaaaaaaaagcagcga 3936
Query: 745 gaactgcatggttacattgttcaacaatccaaccatgctgtttagaaaaaaactcgtcgt 804
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3935 gaactgcatggttacattgttcaacaatccaaccatgctgttaagaaaaaaactcgtcgt 3876
Query: 805 taaggcaatacctttttagattc-aaatgagagcagactgcttcataaaacagcatttta 863
|||||||||| | |||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 3875 taaggcaataacattttagattcaaaatgagagcagactgcatcataaaacagcatttta 3816
Query: 864 aactggaatgtggttggtgaatataaactttttaaaatca-ttcgccatttctaatntac 922
||||| ||||| |||||||||||||||| |||| |||||| |||| |||||||||| |||
Sbjct: 3815 aactgaaatgt-gttggtgaatataaac-ttttcaaatcatttcgtcatttctaatttac 3758
Query: 923 catttatcattagag 937
|| ||||||||||||
Sbjct: 3757 cagttatcattagag 3743
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,154
Number of Sequences: 1807
Number of extensions: 13154
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)