BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZG02RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1659 1318 0.0
>3x_Contig1659
Length = 17570
Score = 1318 bits (665), Expect = 0.0
Identities = 760/785 (96%), Gaps = 5/785 (0%)
Strand = Plus / Plus
Query: 42 gcttctgcaa-gcacgtgctctcatttagattccgcaccttttcaagcctctcatcttct 100
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 9116 gcttctgcaaagcacgtgctctcaaagagattccgcaccttttcaagcctctcatcttct 9175
Query: 101 tagaatatatgctggcttattgctgctgctgttgccttactaaaatgtgtcaatagaagc 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9176 tagaatatatgctggcttattgctgctgctgttgccttactaaaatgtgtcaatagaagc 9235
Query: 161 ctctcattgtttgtttcgctacttgaagctagaatttaaaggttttttccatgagttttg 220
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 9236 ctctcaatgtatgtttcgctacttgaagctagaatttaaaggttttttccatgagtgttg 9295
Query: 221 attctcgacaggtttcttcagcgacagaaaataaaattatctgtcacgtgaataagcact 280
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9296 agtctcgacaggtttctgcagcgacagaaaataaaattatctgtcacgtgaataagcact 9355
Query: 281 taattcccatccatacataagtagataaatatatatatcgggatgattaaaacacgtact 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9356 taattcccatccatacataagtagataaatatatatatcgggatgattaaaacacgtact 9415
Query: 341 ctttgatttctagagtgttatggttgtctctgataagaattaaaaccctagtagaatcca 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9416 ctttgatttctagagtgttatggttgtctctgataagaattaaaaccctagtagaatcca 9475
Query: 401 gcccatatgtattgtatttgtggaaaatgacgttggcgatggatcgctttctgatgtagc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9476 gcccatatgtattgtatttgtggaaaatgacgttggcgatggatcgctttctgatgtagc 9535
Query: 461 atttttctaaagggaaaagcacggtttcctcacgattgtatggtaaaatatcaagtatct 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9536 atttttctaaagggaaaagcacggtttcctcacgattgtatggtaaaatatcaagtatct 9595
Query: 521 ctgcataccccgcccaattccaattgagattcactggaaacttcaagtttggtgtgttca 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9596 ctgcataccccgcccaattccaattgagattcactggaaacttcaagtttggtgtgttca 9655
Query: 581 aagagaacatatcgacttctgtttctaatcgcttcccgtatagggcgcaatgcaattcct 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9656 aagagaacatatcgacttctgtttctaatcgcttcccgtatagggcgcaatgcaattcct 9715
Query: 641 catttcttattatacagagtatttccttgttcttggataag-tggagtacctgctttgaa 699
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 9716 catttcttattatagagagtatttccttgttcttggataagttggagtacctgctttgaa 9775
Query: 700 a-tctgcc-atattttacctctatgattcaccaaaataagtttctgaaatggatattccc 757
| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 9776 attctgccaatattttacctctatgattcagcaaaataagtttctgaaatggatatttcc 9835
Query: 758 caattgacagaagtaaatctggtttcggcttaatttgctgttcgagtaaatggaaatata 817
||||||||| ||||||||| | ||||| | ||||||||||||||||| || || ||||
Sbjct: 9836 caattgacaagagtaaatct-gattcgggctcatttgctgttcgagtaattgaaattata 9894
Query: 818 ggccc 822
|||||
Sbjct: 9895 ggccc 9899
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8312
Number of Sequences: 1807
Number of extensions: 8312
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)