BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZG05FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1335 1513 0.0
>3x_Contig1335
Length = 8696
Score = 1513 bits (763), Expect = 0.0
Identities = 830/843 (98%), Gaps = 7/843 (0%)
Strand = Plus / Minus
Query: 89 catattaatcagattttctcacttaaaacactaagatactatgtcaattcctagtaaatc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5995 catattaatcagattttctcacttaaaacactaagatactatgtcaattcctagtaaatc 5936
Query: 149 ctactaatttgcttctgaactttattgatctcgcgtaaacacttacctgaggacatatgc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5935 ctactaatttgcttctgaactttattgatctcgcgtaaacacttacctgaggacatatgc 5876
Query: 209 ttcgatcattagacagatctctttgtattctgtacttttccaaggtttcgacacgatttt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5875 ttcgatcattagacagatctctttgtattctgtacttttccaaggtttcgacacgatttt 5816
Query: 269 tttcgattctaaatagagaatttccgaaaacggtagataaacgtgactatcatgtggata 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5815 tttcgattctaaatagagaatttccgaaaacggtagataaacgtgactatcatgtggata 5756
Query: 329 gaaatggggaaggtgacaacacttggattcgggattcggtgaggaaccacaatataccta 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5755 gaaatggggaaggtgacaacacttggattcgggattcggtgaggaaccacaatataccta 5696
Query: 389 gaaaagtatcctagattcattgaacaacaggtagttcttaatgattaaattacggtatac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5695 gaaaagtatcctagattcattgaacaacaggtagttcttaatgattaaattacggtatac 5636
Query: 449 attttccaatgttcacgtgactcaaaactgtcatgtgaccgacacaaagaatacactact 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5635 attttccaatgttcacgtgactcaaaactgtcatgtgaccgacacaaagaatacactact 5576
Query: 509 tagatttcccaattaggagaaacgtaaacattgaaatagtgatataaagtcatagaaatg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5575 tagatttcccaattaggagaaacgtaaacattgaaatagtgatataaagtcatagaaatg 5516
Query: 569 caatgctacatgtgtagaaaccacattacagtgttcatcacgacaacctataaaactgct 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5515 caatgctacatgtgtagaaaccacattacagtgttcatcacgacaacctataaaactgct 5456
Query: 629 attcaggagccaggtactaaataagatcaaacagatacaagcctagttcaaagtagctca 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5455 attcaggagccaggtactaaataagatcaaacagatacaagcctagttcaaagtagctca 5396
Query: 689 aagaataatgactgccggccaatttcaaccattacatcagaaacaggattctcaaactgc 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5395 aagaataatgactgccggccaatttcaaccattacatcagaaacaggattctcaaactgc 5336
Query: 749 gagtacaagtttgcacaaggccatgtttaagaaaccatcaccacaccagctttcagaaaa 808
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5335 gagtacaagtttgcacaaggccatgtttaagaaaccatcaccacaccagctttcag-aaa 5277
Query: 809 tgaag-acaagtttgcttctcctaccgatgatttgctctctccatgtt-ccaaagtttga 866
||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct: 5276 tgaagaacaagtttgcttctcctaccgatgatttgctctctccatgttcccagaagttga 5217
Query: 867 acgatcacagatcg-agttgtttcaggc-aagagc-atcctaccagattg-atttccagt 922
|||||||||||||| ||||||| ||||| |||||| ||||||||| ||| |||||||||
Sbjct: 5216 acgatcacagatcgaagttgttccaggcaaagagcaatcctaccaagttgaatttccagt 5157
Query: 923 cga 925
|||
Sbjct: 5156 cga 5154
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5996
Number of Sequences: 1807
Number of extensions: 5996
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)