BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC24ZG05RM1.SCF screened BAC_end
         (1015 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig690                                                         1124   0.0  

>3x_Contig690 
          Length = 2822

 Score = 1124 bits (567), Expect = 0.0
 Identities = 630/647 (97%), Gaps = 3/647 (0%)
 Strand = Plus / Plus

                                                                        
Query: 63   cttctcatacataggatatagcttatgggatgcaagccgactaaagagctcaaacaatat 122
            |||||||||||||||||||||||||| | ||||||||||||||  |||||||||||||||
Sbjct: 1186 cttctcatacataggatatagcttattgtatgcaagccgactatcgagctcaaacaatat 1245

                                                                        
Query: 123  cctgctaaccatcttcttttgtgggaagatctcatgcaatggtggccgtttgttggctaa 182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 cctgctaaccatcttcttttgtgggaagatctcatgcaatggtggccgtttgttggctaa 1305

                                                                        
Query: 183  actggaaatcagtctcctgcttgataccaagatacagcttctaaaaccaagcttttttta 242
            |||||||||||||||||||||||||||||||||||||||||||||||||||| | |   |
Sbjct: 1306 actggaaatcagtctcctgcttgataccaagatacagcttctaaaaccaagcatctcgaa 1365

                                                                        
Query: 243  caaaaacagttttagctctcgggtatatcagaagattcgaataaagcctggaagatctca 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 caaaaacagttttagctctcgggtatatcagaagattcgaataaagcctggaagatctca 1425

                                                                        
Query: 303  caaaagcctaacgttctgcttaatcctgtaggtctgcctttgatccatttgtgcgtaaga 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 caaaagcctaacgttctgcttaatcctgtaggtctgcctttgatccatttgtgcgtaaga 1485

                                                                        
Query: 363  acttgatgatgtatttggttttgatcctttcctggttaaaattcgagtttctataaaatg 422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1486 acttgatgatgtatttggttttgatcctttcctggttaaaattcgagtttctataaaatg 1545

                                                                        
Query: 423  attctttaccaaccgttacacataatcggataaggtccgattatttaagttaaaggcatg 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 attctttaccaaccgttacacataatcggataaggtccgattatttaagttaaaggcatg 1605

                                                                        
Query: 483  aaagtaggtgtcaatacacaatcaatatctatcaatggtgctaaaattccaagctaattg 542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1606 aaagtaggtgtcaatacacaatcaatatctatcaatggtgctaaaattccaagctaattg 1665

                                                                        
Query: 543  tcgctctttgattcgaccattgttttcacgtttcttattcggcttcctgttgattattcg 602
            ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 1666 tcgctctttgattcgaccattgttttcacgttt-ttattcggc-tcctgttgattattcg 1723

                                                                        
Query: 603  catgctgttatcggcgcaggtgtagtcggactgtctattgccaacgaacttaccaaagtc 662
            |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1724 catgctgttatcggtgcaggtgtagtcggactggctattgccaacgaacttaccaaagtc 1783

                                                           
Query: 663  ccaggcaattaattgattgttttggtagaagattgcaaagattggcc 709
            ||||||||| || |||||||||||| |||||| ||||||||||||||
Sbjct: 1784 ccaggcaataaagtgattgttttgg-agaagaatgcaaagattggcc 1829


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8854
Number of Sequences: 1807
Number of extensions: 8854
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 1015
length of database: 10,358,551
effective HSP length: 16
effective length of query: 999
effective length of database: 10,329,639
effective search space: 10319309361
effective search space used: 10319309361
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)