BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZG06FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1392 0.0
>3x_Contig1652
Length = 14842
Score = 1392 bits (702), Expect = 0.0
Identities = 797/817 (97%), Gaps = 10/817 (1%)
Strand = Plus / Plus
Query: 90 aatcgtaatcagggtagtatgaaaacaacggagaactgcgagacaaagatctctgcgact 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4833 aatcgtaatcagggtagtatgaaaacaacggagaactgcgagacaaagatctctgcgact 4892
Query: 150 gtgttcaactcagttcagacttataaactagctcatcttgattgaatttaacttttacac 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4893 gtgttcaactcagttcagacttataaactagctcatcttgattgaatttaacttttacac 4952
Query: 210 ttttcagactttaggaaaaaaagaaagttgaagtttaatgagagtcgtattttgtgatta 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4953 ttttcagactttaggaaaaaaagaaagttgaagtttaatgagagtcgtattttgtgatta 5012
Query: 270 atgatgaagttggctgacggttttatagtacaattgataatcggttcgttatgaaactat 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5013 atgatgaagttggctgacggttttatagtacaattgataatcggttcgttatgaaactat 5072
Query: 330 atacatatatatatatatattctatacaggcggacacaattcatgcggaattttcgtctt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5073 atacatatatatatatatattctatacaggcggacacaattcatgcggaattttcgtctt 5132
Query: 390 gtatagtttttggctgtatttctgcatttgcattgctgtcttcggtctcttcttttaccg 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5133 gtatagtttttggctgtatttctgcatttgcattgctgtcttcggtctcttcttttaccg 5192
Query: 450 gctcgctctctgcgatcactgcttgtcttaggatttctgcgaatgtgtcactgacagtaa 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5193 gctcgctctctgcgatcactgcttgtcttaggatttctgcgaatgtgtcactgacagtaa 5252
Query: 510 ccggttcgggattctttgaagtctttggattaccgttgcacttggctaattcactaccga 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5253 ccggttcgggattctttgaagtctttggattaccgttgcacttggctaattcactaccga 5312
Query: 570 aagcttcaatggcttttctattcgtccagttgttgattgaaatgcgttctgtttctcttt 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5313 aagcttcaatggcttttctattcgtccagttgttgattgaaatgcgttctgtttctcttt 5372
Query: 630 gtaggtttaaaagcttatcaaagctttttttgaggacggtcatttttctgtcacgagatg 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5373 gtaggtttaaaagcttatcaaagctttttttgaggacggtcatttttctgtcacgagatg 5432
Query: 690 cacgtaatgatttcctttgcaaccttgacatcttggcaccattttcagtctcttttacat 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5433 cacgtaatgatttcctttgcaaccttgacatcttggcaccattttcagtctctttaccat 5492
Query: 750 ccaacgcttttttctttgccaataactcgttcacgctgtggcttcgnagttgctccagtt 809
||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||
Sbjct: 5493 ccaacgcttttttctttgccaataactcg-tcacgctgt-gcttcg-agttgctccagtt 5549
Query: 810 ttcaaaaaatctttacgagttcttagatggagtcttcagaagcccattttatcttgtggc 869
| || |||| ||||||| |||||||| ||||| ||| || ||||| |||||||||
Sbjct: 5550 tcagaagaatc-ttacgag-tcttagat-gagtcatcaagag-ccattatatcttgtg-- 5603
Query: 870 caatcttctctaactcgcctttctatatcagactcat 906
||||||||||||||||||| |||||||||||||||||
Sbjct: 5604 caatcttctctaactcgcc-ttctatatcagactcat 5639
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,041
Number of Sequences: 1807
Number of extensions: 11041
Number of successful extensions: 1531
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)