BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZG06RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1261 0.0
>3x_Contig1536
Length = 11572
Score = 1261 bits (636), Expect = 0.0
Identities = 705/722 (97%), Gaps = 5/722 (0%)
Strand = Plus / Plus
Query: 48 cgtggataatgaacgagtttgtgaattaatacctcaatgtgatgttatcttaatcaacaa 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7934 cgtggataatgaacgagttcgtgaattaatacctcaatgtgatgttatcttaatcaacaa 7993
Query: 108 ctttattttcgatgctcctttgaacaaagaagtagaaaaggttgtacaaggcctcaaggc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7994 ctttattttcgatgctcctttgaacaaagaagtagaaaaggttgtacaaggcctcaaggc 8053
Query: 168 cgggtccaagataatttctttgaaaagcatacgacctcctggttacagtataaattacga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8054 cgggtccaagataatttctttgaaaagcatacgacctcctggttacagtataaattacga 8113
Query: 228 tgacatggacaatatcttcaaccgattacatgtagagtcattcaagctccctgaaaacag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8114 tgacatggacaatatcttcaaccgattacatgtagagtcattcaagctccctgaaaacag 8173
Query: 288 tgtttcatggacctacagaagtgttggtgattattatatcagtactgtattggatgcaat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8174 tgtttcatggacctacagaagtgttggtgattattatatcagtactgtattggatgcaat 8233
Query: 348 tgatgagtcgattttctgtcctccgattttaggtaggattagaaaaaaagaatcaatcaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8234 tgatgagtcgattttctgtcctccgattttaggtaggattagaaaaaaagaatcaatcaa 8293
Query: 408 gtataccagatagtaaagtcaatgctttagaccatgtcgttatttgctttacctgtgaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8294 gtataccagatagtaaagtcaatgctttagaccatgtcgttatttgctttacctgtgaaa 8353
Query: 468 tagttttataagatctatttataacacaatgcaagtaatcgaatataaaaagataaaatc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8354 tagttttataagatctatttataacacaatgcaagtaatcgaatataaaaagataaaatc 8413
Query: 528 accagtaatgatacaaacagnttttttacttcttgatatgtaagttatgctaaattgcac 587
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 8414 accagtaatgatacaaacagtttttttacttcttgatatgtaagttatgctaaattgcac 8473
Query: 588 tgtttatctatgttctgtagtatagtaatcgaatt-agaagctncatagagagtttt-aa 645
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct: 8474 tgtttatctatgttctgtagtatagtaatcgaattaagaagctccatagagagttttaaa 8533
Query: 646 acgtggtttagctggggtcattttgat-aagccttttcctgaacactaaacaaagtaaaa 704
|||||||||||||||| |||||||||| |||||| ||||||| |||| ||||||||||||
Sbjct: 8534 acgtggtttagctgggttcattttgataaagcctcttcctgaccacttaacaaagtaaaa 8593
Query: 705 gattgtgcctgtagttttggagtccctttcaagaaattccaacttc-taacgaaacaaaa 763
||| |||||||||||||| |||| |||||||||||| ||||||| | |||||||||| ||
Sbjct: 8594 gatggtgcctgtagtttttgagtacctttcaagaaa-tccaactccataacgaaacagaa 8652
Query: 764 ct 765
||
Sbjct: 8653 ct 8654
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8173
Number of Sequences: 1807
Number of extensions: 8173
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)