BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZG09FM1.SCF screened BAC_end
(1014 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1176 769 0.0
>3x_Contig1176
Length = 5769
Score = 769 bits (388), Expect = 0.0
Identities = 451/472 (95%)
Strand = Plus / Minus
Query: 122 caacaatcgcattggtaaattctacaccgtagtcttcgaactcttctaaaggaccattat 181
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2555 caacaatagcattggtaaattctacaccgtagtcttcgaactcttctaaattaccattat 2496
Query: 182 cagtactactttctttctcctgaatattgaattgataatcttttttcaaagacgcctcat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2495 cagtactactttctttctcctgaatattgaattgataatcttttttcaaagacgcctcat 2436
Query: 242 cagattgcatgatttttgagctggatcttgaacagtattgtctttcctgtttttacgctc 301
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2435 cagattgcatgatttatgagctgtatcttgaacagtattgtctttcctgtttttacgctc 2376
Query: 302 gttgctgggcttagtactatcacgaaacttatttaaatgcaaatgcttattcaataacca 361
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2375 gttgctggtcttagtactatcacgaaacttatttaaatccaaatgcttattcaataacca 2316
Query: 362 tggtctgagacaaaataggaacccttggacttgtatttatatttgttgaatcgatcaagc 421
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2315 tggtctgagacaaaataggaacccttggacttgtatttatatctgttgaatcgatcaagc 2256
Query: 422 tgggaaagacgctcgtgatgtatctaacctgctgataatctccagttgaacttagagtga 481
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 2255 tgggaaagacgctcgtgatgtatctaacctgctgataacctccagttgaactcagagtga 2196
Query: 482 ccctccatgatgaataaaaaaaactgttatcttgcgggctctaaaattaacattagactc 541
|||||| |||||| |||||||||| |||||||||||||||||||||||||| || ||||
Sbjct: 2195 tcctccaagatgaaaaaaaaaaactcttatcttgcgggctctaaaattaacactaaactc 2136
Query: 542 tagtactttggaagtttggctactccactgaactgaccccttctgttgaatt 593
||||||| |||||||||| ||||||||| |||| |||||||||||||||||
Sbjct: 2135 tagtactctggaagtttgtctactccacaaaactcaccccttctgttgaatt 2084
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9070
Number of Sequences: 1807
Number of extensions: 9070
Number of successful extensions: 111
Number of sequences better than 1.0e-20: 1
length of query: 1014
length of database: 10,358,551
effective HSP length: 16
effective length of query: 998
effective length of database: 10,329,639
effective search space: 10308979722
effective search space used: 10308979722
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)