BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZG10FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig581 1421 0.0
>3x_Contig581
Length = 1616
Score = 1421 bits (717), Expect = 0.0
Identities = 795/816 (97%), Gaps = 5/816 (0%)
Strand = Plus / Minus
Query: 87 cagcacccatctctctaccgataccggattggccgaaaccaccgaatggaacattttgat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 cagcacccatctctctaccgataccggattggccgaaaccaccgaatggaacattttgat 777
Query: 147 ggaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgtcaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ggaagttgttgtaggtgttaatccagacggtaccggccttaactctgttggaaacgtcaa 717
Query: 207 tagccttgttaacatccttagtgtgaataccggcagcaagaccatattcagagtcgttag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tagccttgttaacatccttagtgtgaataccggcagcaagaccatattcagagtcgttag 657
Query: 267 ccttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaaaga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ccttagcgacgacttcgtcaacggtagtgaacttagagactgttacaacaggaccaaaga 597
Query: 327 tttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttgataa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tttcttccttaacaatttgcatgtcttctttaacatcagcaaagatagttggcttgataa 537
Query: 387 agtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaagtac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agtaacccttgttaccgattctttcaccaccagtgatgacacgagcaccttcagaagtac 477
Query: 447 cgacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcaccttgga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cgacatcaacataggataagatcttgtcaatttgcatttgagaagtttgagcaccttgga 417
Query: 507 aaacgttttcttcgaatggattaccgacctttagagattcagcgtattgcttgaattttt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aaacgttttcttcgaatggattaccgacctttagagattcagcgtattgcttgaattttt 357
Query: 567 ctaagacctcttcgtaaacagtatcttgaacgtaaattcttgaacctgcgcaacagactt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctaagacctcttcgtaaacagtatcttgaacgtaaattcttgaacctgcgcaacagactt 297
Query: 627 caccggagttgtagaagataccaaaagcaatgttcttaacagctttatccaagtcagcat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 caccggagttgtagaagataccaaaagcaatgttcttaacagctttatccaagtcagcat 237
Query: 687 caccgaaaacgatatttggagacttaccaccaagtttctaagtgaccttcttgatggaat 746
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 236 caccgaaaacgatatttggagacttaccaccaagttctaaagtgaccttcttgatggaat 177
Query: 747 ccgcac-agtttttataatgtgacgaccagtagcagtggaaacagtgaaagcgacctttc 805
| |||| |||||| ||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 176 cggcacaagttttcataatgtgacgaccagtagcagtggaaccagtgaaagcgacc-ttc 118
Query: 806 ttgatgttagggatgggtacaaatttttttaccgaccattttaccgaaaactgggatgat 865
||||||| | ||||||||||||||| ||| |||||| |||||||||||| ||||||||||
Sbjct: 117 ttgatgtca-ggatgggtacaaattctttcaccgacgattttaccgaaacctgggatgat 59
Query: 866 gtttaacacacccttttgttacaccagctttttgca 901
||| | ||||||||| ||||||||||| |||||
Sbjct: 58 gttaacaacacccttt--gtacaccagcttcttgca 25
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6029
Number of Sequences: 1807
Number of extensions: 6029
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)