BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZG11FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1399 1409 0.0
>3x_Contig1399
Length = 7157
Score = 1409 bits (711), Expect = 0.0
Identities = 772/787 (98%), Gaps = 4/787 (0%)
Strand = Plus / Plus
Query: 86 atgaactaatggaacaaggtaagatcttgggtagattcgtcgttgacacttacaaataat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atgaactaatggaacaaggtaagatcttgggtagattcgtcgttgacacttacaaataat 608
Query: 146 cggattaattaaagaatgtgtccctcattagatttcttttctttatttaactcccattat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cggattaattaaagaatgtgtccctcattagatttcttttctttatttaactcccattat 668
Query: 206 tacaaaaaaaattagtgcaagggaagagtctctcacctcttaacttaaaatgaaaaagaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tacaaaaaaaattagtgcaagggaagagtctctcacctcttaacttaaaatgaaaaagaa 728
Query: 266 caaacgtattcgccataatcatatcatcctcagcctcctattttaacaaactcacacaac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 caaacgtattcgccataatcatatcatcctcagcctcctattttaacaaactcacacaac 788
Query: 326 gattcgctctggctttatgaaccttgccaggcgtgtgtttttaagaagaagtttaaccgt 385
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 789 gattcgctctggctttatgaaccttgccaggcgtgtgttttaaagaagaagtttaaccgt 848
Query: 386 tagataagaaaggatgaaaatttgacgatacgttcttattccatgccacccccccccccc 445
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 849 tagataagaaaggatgaaaatttgacgatacgttcttattccatgcca-ccccccccccc 907
Query: 446 actgttacgtatgtttattgttagagcttatgacctatcgatgactattgttattatctt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 actgttacgtatgtttattgttagagcttatgacctatcgatgactattgttattatctt 967
Query: 506 atacagatgaaaaatctcttttatttgaattgatttcaaacaacgtattttttatatatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 atacagatgaaaaatctcttttatttgaattgatttcaaacaacgtattttttatatatc 1027
Query: 566 atagtagtcattgacccccctctctttcttatcaatgaagtaaataatattcaatcaata 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 atagtagtcattgacccccctctctttcttatcaatgaagtaaataatattcaatcaata 1087
Query: 626 ttccaatttttaaactaactttaataccagacttatctttgaattgactggtattgtcac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 ttccaatttttaaactaactttaataccagacttatctttgaattgactggtattgtcac 1147
Query: 686 tacttagcattaatttatgtgtattttttaagatatatatatattattctatttgtac-a 744
||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct: 1148 tac-tagcattaatttatgtgtattttttaagatatatatatattactctattgttacaa 1206
Query: 745 agttttacagatatttttattcttcttgtgcactaattgcaccggcaacgttttttattg 804
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 1207 agttttacagatatttttattcttcttgtgcactaattgcaccggcaacg-tctttattg 1265
Query: 805 aaccgtttcaatgatgccatagtattcttattgttaacgaacctcttactgcgagtttcc 864
||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct: 1266 aaccgttcaaatgatgccatagtatccttatcgttaacgaacctcttactgcgagtctcc 1325
Query: 865 aaactta 871
| |||||
Sbjct: 1326 agactta 1332
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,274
Number of Sequences: 1807
Number of extensions: 12274
Number of successful extensions: 111
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)