BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZG11RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1277 0.0
>3x_Contig1794
Length = 36744
Score = 1277 bits (644), Expect = 0.0
Identities = 731/755 (96%), Gaps = 4/755 (0%)
Strand = Plus / Plus
Query: 52 acgcaaatacattgcttccaagctacgatactcatgccgctattccccacagtggctctg 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34993 acgcaaatacattgcttccaagctacgatactcatgccgctattccccacagtggctctg 35052
Query: 112 taccattcggtgattctgattttaatatgtatcatgattcgaatctatatttcccaaaac 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35053 taccattcggtgattctgattttaatatgtatcatgattcgaatctatatttcccaaaac 35112
Query: 172 aagtcattaactcaccagttatgtctccggaagttcaaccattagatgagaaaattggat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35113 aagtcattaactcaccagttatgtctccggaagttcaaccattagatgagaaaattggat 35172
Query: 232 tatcacctgtttcgttaagtcctgtggcccacaacagaaccagtctgagtttactgcagc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35173 tatcacctgtttcgttaagtcctgtggcccacaacagaaccagtctgagtttactgcagc 35232
Query: 292 acagaaatctaagccatagcgaattatcaatatcggaactgaatttaaggaataaagtgt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35233 acagaaatctaagccatagcgaattatcaatatcggaactgaatttaaggaataaagtgt 35292
Query: 352 tgcagtctccagaattatcctctaatatttaccagcctgagcatattcatgctgaattgg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35293 tgcagtctccagaattatcctctaatatttaccagcctgagcatattcatgctgaattgg 35352
Query: 412 cttcacctcaggcattacctttatctccaatttcatctcccacttggaaaccaatatcgc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35353 cttcacctcaggcattacctttatctccaatttcatctcccacttggaaaccaatatcgc 35412
Query: 472 tcgcacaaaatcaaaccatagatgcagtgtctctggacgatgagcttccaccatttcaag 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35413 tcgcacaaaatcaaaccatagatgcagtgtctctggacgatgagcttccaccatttcaag 35472
Query: 532 aagctcttaaagcagagtctctacctgtcgatccacctacatattcggagtcagtttgca 591
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 35473 aagctcttaaagcagagtctctacctgtcgatccacctacatattcggagtcagttgcaa 35532
Query: 592 ctgatggtaagacgacanagtcaaaagcttgcagcgaggctttatcggtggtggttcctg 651
||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 35533 ctgatggtaagacgacaaagtcaaaagctagcagcgaggcttcatcggtggtggttcctg 35592
Query: 652 aatattgcctttcc-atactacagatttggtagatgaagaccttgctgcagggtttccac 710
|| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 35593 aaatatgcctttccaatactacagatttggtagatgaagacattgctgcaggg-ttccac 35651
Query: 711 tttaatggaaatgataccggatctttaatattttcgactgcaatgatgagaatcccactc 770
|| ||||||||||||| ||||||||||| || |||||||||||||||| |||||||||
Sbjct: 35652 ttcaatggaaatgatagcggatctttaaatcttccgactgcaatgatgag-atcccactc 35710
Query: 771 ccccaatgattggacagcaggtttttcgtaaatca 805
| ||||||| |||||||| |||| ||||||||||
Sbjct: 35711 acacaatgataggacagca-gtttctcgtaaatca 35744
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6717
Number of Sequences: 1807
Number of extensions: 6717
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)