BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZH05FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig343 1322 0.0
>3x_Contig343
Length = 1398
Score = 1322 bits (667), Expect = 0.0
Identities = 667/667 (100%)
Strand = Plus / Plus
Query: 88 tatcttcacgaaggggatgactttacgattcaaatctccagatgcagatgtaatccgtag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tatcttcacgaaggggatgactttacgattcaaatctccagatgcagatgtaatccgtag 791
Query: 148 ttgggtacagtccatcaacgagttattaccacacttgaacaattatggctctgaatctga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ttgggtacagtccatcaacgagttattaccacacttgaacaattatggctctgaatctga 851
Query: 208 ccttgagattgcagaatccgatgacgaacaaattgaaggggaacaagctgatgaacatgg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ccttgagattgcagaatccgatgacgaacaaattgaaggggaacaagctgatgaacatgg 911
Query: 268 gatacagaaaacaactcaagtcgttaaagaaaataaagataccaattccacttctgatat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 gatacagaaaacaactcaagtcgttaaagaaaataaagataccaattccacttctgatat 971
Query: 328 aaaatctattaataacggagttgtcgaagaagacaagaagtttttcgagttttatgacgc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 aaaatctattaataacggagttgtcgaagaagacaagaagtttttcgagttttatgacgc 1031
Query: 388 cttaaaaccttcgcatctaattcaatccggtgtaatacatgccaagaataaaagatctct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 cttaaaaccttcgcatctaattcaatccggtgtaatacatgccaagaataaaagatctct 1091
Query: 448 aactggaaggaaatggaaatcctataaatgtgaacttacaaataggtctttaaaacttta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 aactggaaggaaatggaaatcctataaatgtgaacttacaaataggtctttaaaacttta 1151
Query: 508 ttcgatcaagactggtgactgtaggtattctgttccaatggagaatgtagttgactgtat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 ttcgatcaagactggtgactgtaggtattctgttccaatggagaatgtagttgactgtat 1211
Query: 568 tgaagtggacagtaaagatcctttattcgcagtaatcactttcaaccaaaggctaaaact 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 tgaagtggacagtaaagatcctttattcgcagtaatcactttcaaccaaaggctaaaact 1271
Query: 628 aaaagctaatgatgaagatgaattagtagattggatcataaatacaaagagttgcgtaat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 aaaagctaatgatgaagatgaattagtagattggatcataaatacaaagagttgcgtaat 1331
Query: 688 ggttagaaactcattagcagcacacacaaaaagaagttgagatagataggcgatggtcct 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 ggttagaaactcattagcagcacacacaaaaagaagttgagatagataggcgatggtcct 1391
Query: 748 cacattt 754
|||||||
Sbjct: 1392 cacattt 1398
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6914
Number of Sequences: 1807
Number of extensions: 6914
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)