BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZH05RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1551 1522 0.0
>3x_Contig1551
Length = 9073
Score = 1522 bits (768), Expect = 0.0
Identities = 802/812 (98%), Gaps = 1/812 (0%)
Strand = Plus / Minus
Query: 48 cgagagggatagcgaacatatctttggtggaaaagtctgacagaatttcaggtaaaaaaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3071 cgagagggatagcgaacatatctttggtggaaaagtctgacagaatttcaggtaaaaaaa 3012
Query: 108 aatgaagacaaggtaaaaataaagaatggtatgccagattaacaaacacactaaaataca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3011 aatgaagacaaggtaaaaataaagaatggtatgccagattaacaaacacactaaaataca 2952
Query: 168 gtgagagaagcaacttatagacataagttatattaggtaattcaccatgcactaatatct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2951 gtgagagaagcaacttatagacataagttatattaggtaattcaccatgcactaatatct 2892
Query: 228 ttcgaattcaaagttcaatactgaaattccatgtcactgtccgcatgagaactgggcaac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2891 ttcgaattcaaagttcaatactgaaattccatgtcactgtccgcatgagaactgggcaac 2832
Query: 288 agcgtgattacgcaacgtaagttaatttgtatctcaaggtatggcagagccttcttatac 347
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2831 agcgtgattacgcaacgtaagtcaatttgtatctcaaggtatggcagagccttcttatac 2772
Query: 348 ttctcttaatacaactgtaaaacatacatcattttatcagattaactagagaagagccat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2771 ttctcttaatacaactgtaaaacatacatcattttatcagattaactagagaagagccat 2712
Query: 408 gaaacagtcataataatatacataatataaagtaacagaaacgaagaaaaagtcataaaa 467
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2711 gcaacagtcataataatatacataatataaagtaacagaaacgaagaaaaagtcataaaa 2652
Query: 468 ctgataaaaccgttaagttagttctatcatttagttttgaactacgcaaagaacgttgaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2651 ctgataaaaccgttaagttagttctatcatttagttttgaactacgcaaagaacgttgaa 2592
Query: 528 aattcatcatcaaacatgtcaagcgcagaatcaagaaatagatcgttatccctaatgcca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2591 aattcatcatcaaacatgtcaagcgcagaatcaagaaatagatcgttatccctaatgcca 2532
Query: 588 taaggaagtgcattcatatcgagaatatgtgattcttgattggtgggtggcaatgaccag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2531 taaggaagtgcattcatatcgagaatatgtgattcttgattggtgggtggcaatgaccag 2472
Query: 648 tcaaatgcctggataatgctagtggaaaactcgtccgatacaataaacaagtatgattga 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2471 tcaaatgcctggataatgctagtggaaaactcgtccgatacaataaacaagtatgattga 2412
Query: 708 ttgagtaagttgtctaattcccacccacgttcatttttgaaagtgtcatgaaccaatttg 767
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 2411 ttgagtaagttgtctaattccaacccacgttcatttttgaaggtgtcatgaaccaatttg 2352
Query: 768 aaatacctgtaagctaaaacggcattaaatgacacgttcggtgtcagtttgcaaatacgt 827
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2351 aaatacctgtaagctaaaacggcattaaatgacacg-tcggtgtcagtttgcaaatacgt 2293
Query: 828 attaaacgtaacaagaattttctgaagatcta 859
|| ||||||| ||| | ||||||||||||||
Sbjct: 2292 atcaaacgtagcaatgaatttctgaagatcta 2261
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7709
Number of Sequences: 1807
Number of extensions: 7709
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)