BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZH06FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1596 1578 0.0
>3x_Contig1596
Length = 11686
Score = 1578 bits (796), Expect = 0.0
Identities = 841/848 (99%), Gaps = 6/848 (0%)
Strand = Plus / Plus
Query: 88 actataccagtacttgagcttaggagtaagctgaataaggaactaggtatacttgcttag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 actataccagtacttgagcttaggagtaagctgaataaggaactaggtatacttgcttag 557
Query: 148 ccttttaaaaaaaaaaagcgtgaaagagaagaacctcttagcacagtttccggcttgctt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccttttaaaaaaaaaaagcgtgaaagagaagaacctcttagcacagtttccggcttgctt 617
Query: 208 aatatgtcttcgaacggcaaacaacagggaaacaaggcaggcgatgcagctgggggagcg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aatatgtcttcgaacggcaaacaacagggaaacaaggcaggcgatgcagctgggggagcg 677
Query: 268 tcaggagccacggctcccggtgcaggcggaagtagtggcaatggaaatagtagtgcggcc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcaggagccacggctcccggtgcaggcggaagtagtggcaatggaaatagtagtgcggcc 737
Query: 328 ggaaatgctagcgctaatgccaatgctggcggtagcggtgccagtgggaatgcaccggca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggaaatgctagcgctaatgccaatgctggcggtagcggtgccagtgggaatgcaccggca 797
Query: 388 gcttctaaaccggggttttcagcgtcagatttgaaccgcatcgttttggaatatttgaat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gcttctaaaccggggttttcagcgtcagatttgaaccgcatcgttttggaatatttgaat 857
Query: 448 aagaaggggtatcacagaacggaacagatgcttcgtgctgaatcgtcacgtactttgacg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 aagaaggggtatcacagaacggaacagatgcttcgtgctgaatcgtcacgtactttgacg 917
Query: 508 cctccaaataaaaacgctgctgcttctaacacaatccctgcctcgtctgcatcagccact 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 cctccaaataaaaacgctgctgcttctaacacaatccctgcctcgtctgcatcagccact 977
Query: 568 gcgattacaggaagtactaccactgcaaaacctgtttcaaatccttcgatgcccttgaaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 gcgattacaggaagtactaccactgcaaaacctgtttcaaatccttcgatgcccttgaaa 1037
Query: 628 agagataacaacggccaattgataaaaccgcaacaggtgacacccttgcactattttaga 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 agagataacaacggccaattgataaaaccgcaacaggtgacacccttgcactattttaga 1097
Query: 688 gcttactcaatgttgaaaaattggatcgattcgtctttagaattgtacaaacctgagcta 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 gcttactcaatgttgaaaaattggatcgattcgtctttagaattgtacaaacctgagcta 1157
Query: 748 tcacgtatcatatacccgattttcatttacgtttttttacagttggtcatcaaggacccc 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1158 tcacgtatcatatacccgattttcatttacgtttttttacagttggtcatcaaggacccc 1217
Query: 808 ttac-agcgagaaga-tctttgac-agtattctgtcgatt-caaagcccttcatggatca 863
|||| |||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 1218 ttacaagcgagaagattctttgacaagtattctgtcgattacaaagcccttcatggatca 1277
Query: 864 gaaa-tacccgattattcagtgtcaactcagtagatcacatcaaggaaaatgagtttggc 922
|||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1278 gaaattaaccgattattcagtgtcaactcagtagatcacatcaaggaaaatgag-ttggc 1336
Query: 923 tcaaggtt 930
||||||||
Sbjct: 1337 tcaaggtt 1344
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,331
Number of Sequences: 1807
Number of extensions: 10331
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)