BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC24ZH06RM1.SCF screened BAC_end
         (940 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1806                                                        1088   0.0  

>3x_Contig1806 
          Length = 53694

 Score = 1088 bits (549), Expect = 0.0
 Identities = 659/689 (95%), Gaps = 5/689 (0%)
 Strand = Plus / Minus

                                                                         
Query: 43    gctttagtctgaagtttctctcgcaaaacgttgtcgtacatattaaactaagaaaaaaaa 102
             |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 11230 gctttagtctgaagtttctctcgcaaaacgtt-tcgtacat-ttaaacta-gaaaaaaaa 11174

                                                                         
Query: 103   aaaaatttagttcgctatgtatccgtatatagtgatgagaaccttctagaactgcctcga 162
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11173 aaaaatttagtttgctatgtatccgtatatagtgatgagaaccttctagaactgcctcga 11114

                                                                         
Query: 163   gattttctgtgggtatggaaaacgctcacctgaccgcaggcctggctgaaccctgttttt 222
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 11113 gattttctctgggtatggaaaacgctcacctgaccgcaggcctggctgaaccctgttgtg 11054

                                                                         
Query: 223   ataacacacgtcattacattgactgctcagggatcatgacgaaggtctgccatcctgggg 282
             | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 11053 aaaacacacgtcattacattgactgctcaaggatcatgacgaaggtctgccatcctgggg 10994

                                                                         
Query: 283   agttgatgagattgagtaaaggttcagttgcttcatgcagtgttggtgcggtcactgtcc 342
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10993 agttgatgagattgagtaaaggttcagttgcttcatgcagtgttggtgcggtcactgtcc 10934

                                                                         
Query: 343   tgatgaggagcgaccattcctgctgattcaacacttctatggaatgcaggcacaatagga 402
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10933 tgatgaggagcgaccattcctgctgattcaacacttctatggaatgcaggtacaatagga 10874

                                                                         
Query: 403   aatggaaattggagagttttgcctgtatctctgcgagatcattaccggcgcatgctttgt 462
             ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 10873 aatggaaattggagagttttgcctgtagctctgcgagatcattaccggtgcatgctttgt 10814

                                                                         
Query: 463   acacgtacctctttagttcagtgtagtcctgagattggcccatatcttggcggtgtggtc 522
             | |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 10813 agacgtacctctttagttcagtgtagtcctgagattggcccatagcttggcggt-tggtc 10755

                                                                         
Query: 523   catggaaaccctgctacagttttgaatactgtggtggtgttcgcggtggtggcactgaca 582
             ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||
Sbjct: 10754 catggaaaccctgctacagttttgaatactgtggtggtgtttgcggtggtggtactgtca 10695

                                                                         
Query: 583   tcatcggtctcctttggacacccatgagtcaaatat-ccaatgggtagtctactgggaat 641
             |||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||||
Sbjct: 10694 tcatcggtctcctttggaaacccatgagtcaaagataccaataggtagtctactgggaat 10635

                                                                         
Query: 642   gcaggtgtggcgtttttcttgacggtaatattgtattcgtttttacgagtgtagaatatt 701
             |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 10634 gcaggtttggcgttttgcttgacggtaagattgtattcgtttttacgagtgtagaagatt 10575

                                          
Query: 702   tccggcacgtatctcgtgccgtgtgtttc 730
             ||||| ||||||||| || ||| ||||||
Sbjct: 10574 tccggtacgtatctcttgtcgtttgtttc 10546


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,535
Number of Sequences: 1807
Number of extensions: 12535
Number of successful extensions: 227
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)