BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC24ZH06RM1.SCF screened BAC_end (940 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1806 1088 0.0 >3x_Contig1806 Length = 53694 Score = 1088 bits (549), Expect = 0.0 Identities = 659/689 (95%), Gaps = 5/689 (0%) Strand = Plus / Minus Query: 43 gctttagtctgaagtttctctcgcaaaacgttgtcgtacatattaaactaagaaaaaaaa 102 |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| Sbjct: 11230 gctttagtctgaagtttctctcgcaaaacgtt-tcgtacat-ttaaacta-gaaaaaaaa 11174 Query: 103 aaaaatttagttcgctatgtatccgtatatagtgatgagaaccttctagaactgcctcga 162 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11173 aaaaatttagtttgctatgtatccgtatatagtgatgagaaccttctagaactgcctcga 11114 Query: 163 gattttctgtgggtatggaaaacgctcacctgaccgcaggcctggctgaaccctgttttt 222 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 11113 gattttctctgggtatggaaaacgctcacctgaccgcaggcctggctgaaccctgttgtg 11054 Query: 223 ataacacacgtcattacattgactgctcagggatcatgacgaaggtctgccatcctgggg 282 | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 11053 aaaacacacgtcattacattgactgctcaaggatcatgacgaaggtctgccatcctgggg 10994 Query: 283 agttgatgagattgagtaaaggttcagttgcttcatgcagtgttggtgcggtcactgtcc 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10993 agttgatgagattgagtaaaggttcagttgcttcatgcagtgttggtgcggtcactgtcc 10934 Query: 343 tgatgaggagcgaccattcctgctgattcaacacttctatggaatgcaggcacaatagga 402 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 10933 tgatgaggagcgaccattcctgctgattcaacacttctatggaatgcaggtacaatagga 10874 Query: 403 aatggaaattggagagttttgcctgtatctctgcgagatcattaccggcgcatgctttgt 462 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 10873 aatggaaattggagagttttgcctgtagctctgcgagatcattaccggtgcatgctttgt 10814 Query: 463 acacgtacctctttagttcagtgtagtcctgagattggcccatatcttggcggtgtggtc 522 | |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 10813 agacgtacctctttagttcagtgtagtcctgagattggcccatagcttggcggt-tggtc 10755 Query: 523 catggaaaccctgctacagttttgaatactgtggtggtgttcgcggtggtggcactgaca 582 ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| || Sbjct: 10754 catggaaaccctgctacagttttgaatactgtggtggtgtttgcggtggtggtactgtca 10695 Query: 583 tcatcggtctcctttggacacccatgagtcaaatat-ccaatgggtagtctactgggaat 641 |||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||| Sbjct: 10694 tcatcggtctcctttggaaacccatgagtcaaagataccaataggtagtctactgggaat 10635 Query: 642 gcaggtgtggcgtttttcttgacggtaatattgtattcgtttttacgagtgtagaatatt 701 |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 10634 gcaggtttggcgttttgcttgacggtaagattgtattcgtttttacgagtgtagaagatt 10575 Query: 702 tccggcacgtatctcgtgccgtgtgtttc 730 ||||| ||||||||| || ||| |||||| Sbjct: 10574 tccggtacgtatctcttgtcgtttgtttc 10546 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,535 Number of Sequences: 1807 Number of extensions: 12535 Number of successful extensions: 227 Number of sequences better than 1.0e-20: 1 length of query: 940 length of database: 10,358,551 effective HSP length: 16 effective length of query: 924 effective length of database: 10,329,639 effective search space: 9544586436 effective search space used: 9544586436 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)