BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZH07FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig210 1386 0.0
>3x_Contig210
Length = 1662
Score = 1386 bits (699), Expect = 0.0
Identities = 775/790 (98%), Gaps = 8/790 (1%)
Strand = Plus / Minus
Query: 86 tggctagagtttggagagatgggcaaaagaaagattgttttatctacagattcattagta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 tggctagagtttggagagatgggcaaaagaaagattgttttatctacagattcattagta 1212
Query: 146 ctggtaccattgaagagaagattttccaaagacaatcgatgaagatgagtttgagttcat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 ctggtaccattgaagagaagattttccaaagacaatcgatgaagatgagtttgagttcat 1152
Query: 206 gtgttgtggatgaaaaggaggatgttgaacgattgttcagttcggataatttgaagcaat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 gtgttgtggatgaaaaggaggatgttgaacgattgttcagttcggataatttgaagcaat 1092
Query: 266 tgttcaaacttgatacaaaaaccatatgtgatacccatgagacatataattgtaaacgct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 tgttcaaacttgatacaaaaaccatatgtgatacccatgagacatataattgtaaacgct 1032
Query: 326 gtaagaatggaaagcaaattttgaaagctccggtaatgctatacggtgacgcgacttcgt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 gtaagaatggaaagcaaattttgaaagctccggtaatgctatacggtgacgcgacttcgt 972
Query: 386 ggaatcatttgaatcacgatgcattagcaaaaacaaacgaccatctcttgaaaaatgaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 ggaatcatttgaatcacgatgcattagcaaaaacaaacgaccatctcttgaaaaatgaat 912
Query: 446 tcaatcacaaagacatcagttttgcatttcaatatatatcgcattgatctttcatttttt 505
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 911 tcaatcacaaagacatcagttttgcatgtcaatatatatcgcattgatctttcatttttt 852
Query: 506 taaagtacattttaatttcactactatatagacgcattaataaattcggtttctgggcgg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 taaagtacattttaatttcactactatatagacgcattaataaattcggtttctgggcgg 792
Query: 566 ttcggaacagataactcggttaatatgaagaggcaactcaagttttcgagatctttgagc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ttcggaacagataactcggttaatatgaagaggcaactcaagttttcgagatctttgagc 732
Query: 626 cgatcctaatttatataaatacagtttgaatatggatttccatattaaagctaattttat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cgatcctaatttatataaatacagtttgaatatggatttccatattaaagctaattttat 672
Query: 686 tacgagtatgtttgaatagagttacatgaacatatgtacttacccta-nattaggtagtt 744
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 671 tacgagtatgtttgaatagagttacatgaacatatgtacttaccctagaataaggtagtt 612
Query: 745 taagaattataagtgtgttcatc-aatcatcaatgtcttgcg-attcaacggggaacagg 802
||||||||||||||||| ||||| ||||||||||||| |||| |||||||||||||||||
Sbjct: 611 taagaattataagtgtg-tcatcaaatcatcaatgtc-tgcgaattcaacggggaacagg 554
Query: 803 tcgttagggataggggttattacccttcactagtgccactggaacgtagagttgttattg 862
|||||| ||| ||||||||||| ||||||||||||||||| |||| ||||||||||| |
Sbjct: 553 tcgtta-ggagaggggttatta-ccttcactagtgccact-gaacagagagttgttatcg 497
Query: 863 atgatgtttt 872
||||||||||
Sbjct: 496 atgatgtttt 487
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8105
Number of Sequences: 1807
Number of extensions: 8105
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)