BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC24ZH08FM1.SCF screened BAC_end
         (924 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig958                                                         1469   0.0  

>3x_Contig958 
          Length = 3798

 Score = 1469 bits (741), Expect = 0.0
 Identities = 779/789 (98%), Gaps = 2/789 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   tcctctagggaactctctgctttcattccttgcttcataaaagattccttgaacgtgact 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1309 tcctctagggaactctctgctttcattccttgcttcataaaagattccttgaacgtgact 1250

                                                                        
Query: 146  gtcggtccaggatttggtgatcttgctgtagttagtccagattgacccatcatctcatca 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1249 gtcggtccaggatttggtgatcttgctgtagttagtccagattgacccatcatctcatca 1190

                                                                        
Query: 206  atattactatagcgtctagcgactgaagatgcagattgtagatcatctacgttctgcgta 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1189 atattactatagcgtctagcgactgaagatgcagattgtagatcatctacgttctgcgta 1130

                                                                        
Query: 266  gaagcccgagaaagcatcaattgttgaatagataaatcatccggatcgtaggttgctctt 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1129 gaagcccgagaaagcatcaattgttgaatagataaatcatccggatcgtaggttgctctt 1070

                                                                        
Query: 326  aattgcggtgtgccgataggcgatacacggggcgaattcggaactgatatggcttcttca 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 aattgcggtgtgccgataggcgatacacggggcgaattcggaactgatatggcttcttca 1010

                                                                        
Query: 386  aaacttggtaaaggttcatggaaacttatggttgtgtccttatcagggtgtgacattgtg 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 aaacttggtaaaggttcatggaaacttatggttgtgtccttatcagggtgtgacattgtg 950

                                                                        
Query: 446  gccattgcgtaagtgggtaattcaagattatccgatgtgcaaagttcggaaacaacgtga 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  gccattgcgtaagtgggtaattcaagattatccgatgtgcaaagttcggaaacaacgtga 890

                                                                        
Query: 506  acaggagtgtcgattagaacttcaaagtgtctttgtttggttggatctgttgcatcaggt 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  acaggagtgtcgattagaacttcaaagtgtctttgtttggttggatctgttgcatcaggt 830

                                                                        
Query: 566  ttactgatcctcaacattatctcaagtttgtgctttacattgatatggctaaagttgaca 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829  ttactgatcctcaacattatctcaagtttgtgctttacattgatatggctaaagttgaca 770

                                                                        
Query: 626  ctgcttgcatacaagccacgtttaggttcatttagacgggtatgattgacaatgggtaaa 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769  ctgcttgcatacaagccacgtttaggttcatttagacgggtatgattgacaatgggtaaa 710

                                                                        
Query: 686  ttagagttggttctgaatttggtggtaggtttcggtaaatctaaattgttactgatcgat 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  ttagagttggttctgaatttggtggtaggtttcggtaaatctaaattgttactgatcgat 650

                                                                        
Query: 746  gaattctttctgctttttctacccgattagaaatcaattacaccaaatgttgtgcttccg 805
            ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||
Sbjct: 649  gaattctttctgctttttctacccgataagaaatcaattacaccagatgttgtgctaccg 590

                                                                        
Query: 806  gcacgagacgtggggttgggattttatgtcctttagttggggtaaattcatcaataccat 865
              ||||||||||| ||| ||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 589  cgacgagacgtggagtt-ggattttatgttctctagtt-gggtaaattcatcaataccat 532

                     
Query: 866  aaggtggaa 874
            |||||||||
Sbjct: 531  aaggtggaa 523


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5593
Number of Sequences: 1807
Number of extensions: 5593
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)