BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZH10RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1111 1348 0.0
>3x_Contig1111
Length = 6610
Score = 1348 bits (680), Expect = 0.0
Identities = 709/719 (98%)
Strand = Plus / Minus
Query: 50 ccagagagagtttgcaggaggagatgcggagtcatcggtcaagaatcagcttccggagat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1557 ccagagagagtttgcaggaggagatgcggagtcatcggtcaagaatcagcttccggagat 1498
Query: 110 caattcgagtcttaatagagaggcaatcgatgttggtatgttgccgactccaacggcaaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1497 caattcgagtcttaatagagaggcaatcgatgttggtatgttgccgactccaacggcaaa 1438
Query: 170 tgtgtttacttcaccagttagggtcaataagtcacctgggggttttgatgccgggctgca 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1437 tgtgtttacttcaccagttagggtcaataagtcacctgggggttttgatgccgggctgca 1378
Query: 230 ggtcgagaaaagacgtaacaaagatagcgccagtaactctggagttccaagtcctacgat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1377 ggtcgagaaaagacgtaacaaagatagcgccagtaactctggagttccaagtcctacgat 1318
Query: 290 atcttctgtggatactcacgaggaagtactcgatgaagagctctcaaaacttggtaccta 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1317 atcttctgtggatactcacgaggaagtactcgatgaagagctctcaaaacttggtaccta 1258
Query: 350 catgaatcgtgatgtcactcataaaataaaaggaaggatgttatctgaatatattccaaa 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1257 catgaatcgtgatgtcactcataaaataaaaggaaggatgttatctgaatatattccaaa 1198
Query: 410 taattcaatgggcgatggtagtggtggtgttgctgttcagcgttcaatttcattaaataa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1197 taattcaatgggcgatggtagtggtggtgttgctgttcagcgttcaatttcattaaataa 1138
Query: 470 tcgtgtcgtcgagaaacctagtttgaagaaagagactatcatcaatgaggttatcacttc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 tcgtgtcgtcgagaaacctagtttgaagaaagagactatcatcaatgaggttatcacttc 1078
Query: 530 tgtaccatcggataaagaaaatgaacaaaaagctgatggtacgattattaggggatacat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 tgtaccatcggataaagaaaatgaacaaaaagctgatggtacgattattaggggatacat 1018
Query: 590 ggctaacactccaaatcatattagcttccaatggtctaaaataaaagagattgggtcagg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 ggctaacactccaaatcatattagcttccaatggtctaaaataaaagagattgggtcagg 958
Query: 650 aaatttcagtactgtctatctttatgaaagcatcgatgattatttgaacatcaatttaaa 709
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 957 aaatttcagtactgtctatctttatgaatgcatcgatgataatttgaacatcaatttaaa 898
Query: 710 tncgaaactgaaattgttggcagttaaaagcattaaatttcccaaagagttacttatga 768
| || ||||||||| ||||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 897 tccggaactgaaatatgtggcagttaaaagcattaaatatccgagagagttacttatga 839
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7532
Number of Sequences: 1807
Number of extensions: 7532
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)