BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZH11FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig768 1483 0.0
>3x_Contig768
Length = 2062
Score = 1483 bits (748), Expect = 0.0
Identities = 805/819 (98%), Gaps = 4/819 (0%)
Strand = Plus / Plus
Query: 87 cttgtcaccaacaccacctggccaagctctagtagcataatccgtagcttccaatctcac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cttgtcaccaacaccacctggccaagctctagtagcataatccgtagcttccaatctcac 837
Query: 147 ggctttgaacccagtcttgtaatatggtcccactggagatgtgatcacatacaacaaagc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ggctttgaacccagtcttgtaatatggtcccactggagatgtgatcacatacaacaaagc 897
Query: 207 tctgtctggagtaccaacacccaatccgttagtagtaccaatcattgtaggtctgatgta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 tctgtctggagtaccaacacccaatccgttagtagtaccaatcattgtaggtctgatgta 957
Query: 267 caaggagtaaccttgaccttgaggcaccaaatgcttgtcttgttcgatcaacttaccgat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 caaggagtaaccttgaccttgaggcaccaaatgcttgtcttgttcgatcaacttaccgat 1017
Query: 327 caacttgatcaactcatccgaattaaaagatggcaaacagattctggctgctgacttgtt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 caacttgatcaactcatccgaattaaaagatggcaaacagattctggctgctgacttgtt 1077
Query: 387 catacgttccatattcttatcagcacggaacatgctgatcttgttgtctggggttctgta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 catacgttccatattcttatcagcacggaacatgctgatcttgttgtctggggttctgta 1137
Query: 447 cgccttcaaaccttcgaacaattcgaaagcatagtggaacacacacgaggatggatctaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1138 cgccttcaaaccttcgaacaattcgaaagcatagtggaacacacacgaggatggatctaa 1197
Query: 507 cgacaagttcccgtatggtttaatctctgggacaccccaaccgttttcagctgtccattc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1198 cgacaagttcccgtatggtttaatctctgggacaccccaaccgttttcagctgtccattc 1257
Query: 567 gatggttaacatatggtcagtgaaagtttgaccgaaaaccaactcatcgtttggacgtgg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1258 gatggttaacatatggtcagtgaaagtttgaccgaaaaccaactcatcgtttggacgtgg 1317
Query: 627 cttcgatggggtttcgaccttggtgattttaaccttggatgcgtctaaggacatggctct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1318 cttcgatggggtttcgaccttggtgattttaaccttggatgcgtctaaggacatggctct 1377
Query: 687 ataacttgttaaaatatgactcttgctacctcttgatggaatggaaactctgctggaaac 746
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1378 ataacttgttaaaatatgactcttaatacctcttgatggaatggaaactctgctggaaac 1437
Query: 747 agctcttgcacaatttcgtagtccaatgtagttcatgaatgttccttgnccaggnatgaa 806
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 1438 agctcttgcacaattccgtagtccaatgtagttcatgaatgttccttg-ccagggatgaa 1496
Query: 807 atagctaggacaaatgatacagatggtgacaataacgggcccaaccaggacaggaactag 866
||||||||||||||||||||||||||||||||||||||||| ||| || |||| ||| ||
Sbjct: 1497 atagctaggacaaatgatacagatggtgacaataacgggccaaacaagaacagaaacaag 1556
Query: 867 acaattgcccttgcttatctggcctcttaatatacatgt 905
|||| ||||||| ||||||| ||||||| ||||||||||
Sbjct: 1557 acaaatgccctt-cttatct-gcctctt-atatacatgt 1592
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4380
Number of Sequences: 1807
Number of extensions: 4380
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)