BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC24ZH12FM1.SCF screened BAC_end
(990 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig958 1150 0.0
>3x_Contig958
Length = 3798
Score = 1150 bits (580), Expect = 0.0
Identities = 644/658 (97%), Gaps = 7/658 (1%)
Strand = Plus / Minus
Query: 86 tcctctagggaactctctgctttcattccttgcttcataaaagattccttgaacgtgact 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1309 tcctctagggaactctctgctttcattccttgcttcataaaagattccttgaacgtgact 1250
Query: 146 gtcggtccaggatttggtgatcttgctgtagttagtccagattgacccatcatctcatca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1249 gtcggtccaggatttggtgatcttgctgtagttagtccagattgacccatcatctcatca 1190
Query: 206 atattactatagcgtctagcgactgaagatgcagattgtagatcatctacgttctgcgta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1189 atattactatagcgtctagcgactgaagatgcagattgtagatcatctacgttctgcgta 1130
Query: 266 gaagcccgagaaagcatcaattgttgaatagataaatcatccggatcgtaggttgctctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1129 gaagcccgagaaagcatcaattgttgaatagataaatcatccggatcgtaggttgctctt 1070
Query: 326 aattgcggtgtgccgataggcgatacacggggcgaattcggaactgatatggcttcttca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 aattgcggtgtgccgataggcgatacacggggcgaattcggaactgatatggcttcttca 1010
Query: 386 aaacttggtaaaggttcatggaaacttatggttgtgtccttatcagggtgtgacattgtg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 aaacttggtaaaggttcatggaaacttatggttgtgtccttatcagggtgtgacattgtg 950
Query: 446 gccattgcgtaagtgggtaattcaagattatccgatgtgcaaagttcggaaacaacgtga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 gccattgcgtaagtgggtaattcaagattatccgatgtgcaaagttcggaaacaacgtga 890
Query: 506 acaggagtgtcgattagaacttcaaagtgtctttgtttggttggatctgttgcatcaggt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 acaggagtgtcgattagaacttcaaagtgtctttgtttggttggatctgttgcatcaggt 830
Query: 566 ttactgatcctcaacattatctcaag-ttgtgctttacattgatatggctaaagttgaca 624
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 829 ttactgatcctcaacattatctcaagtttgtgctttacattgatatggctaaagttgaca 770
Query: 625 ctgcttgcatacaagccacgttttagtttcatttanacgggtatgaattggcaatgggtt 684
|||||||||||||||||||| ||||| |||||||| ||||||||| |||| ||||||| |
Sbjct: 769 ctgcttgcatacaagccacg-tttaggttcatttagacgggtatg-attgacaatggg-t 713
Query: 685 aaattaaatttggttttgaaatttggtgggaggttttccggtaaatctaaattgttac 742
|||||| | |||||| || |||||||||| |||||| ||||||||||||||||||||
Sbjct: 712 aaattagagttggttctg-aatttggtggtaggttt--cggtaaatctaaattgttac 658
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7445
Number of Sequences: 1807
Number of extensions: 7445
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 990
length of database: 10,358,551
effective HSP length: 16
effective length of query: 974
effective length of database: 10,329,639
effective search space: 10061068386
effective search space used: 10061068386
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)