BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA01FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig511 626 e-179
3x_Contig1600 266 7e-71
>3x_Contig511
Length = 2409
Score = 626 bits (316), Expect = e-179
Identities = 323/324 (99%), Gaps = 1/324 (0%)
Strand = Plus / Minus
Query: 86 taagcaactttcgt-cttaaatctggaaatgaagcctcgcttggagattgggaggttgaa 144
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 taagcaactttcgtacttaaatctggaaatgaagcctcgcttggagattgggaggttgaa 276
Query: 145 aaaataatctccacactcattgcgaaaagaattaaacaacttgaaaatctaccctctaat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaataatctccacactcattgcgaaaagaattaaacaacttgaaaatctaccctctaat 216
Query: 205 ttgggaacatattctttaaatgatgcgcttgattttgtaactaaagatgatattcctacc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ttgggaacatattctttaaatgatgcgcttgattttgtaactaaagatgatattcctacc 156
Query: 265 ggcgcagacgacttcaagttaagagctttggtggagctcaagtccttgaaaatgctaacg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ggcgcagacgacttcaagttaagagctttggtggagctcaagtccttgaaaatgctaacg 96
Query: 325 aaacagaaatctttgagaaagaggctgattgaaagtgttgcagctaaatcgcataatatc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 aaacagaaatctttgagaaagaggctgattgaaagtgttgcagctaaatcgcataatatc 36
Query: 385 attccatctctccgtgactctcct 408
||||||||||||||||||||||||
Sbjct: 35 attccatctctccgtgactctcct 12
>3x_Contig1600
Length = 9359
Score = 266 bits (134), Expect = 7e-71
Identities = 171/178 (96%), Gaps = 4/178 (2%)
Strand = Plus / Plus
Query: 692 agcaacgtttagcagccttgaagtccaatgatgaagaagcatatttgaaattgttagacc 751
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 1 agcaacgtttagcagccttgaagtccaatgatgaagaagcatattggaa-ttgttagacc 59
Query: 752 aaaccaaagataccagaattacacatctattgaaacaaactaattctttcttggattctc 811
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 aacccaaagatacaagaattacacatctattgaaacaaactaattctttcttggattctc 119
Query: 812 ttgctcaagcgg-tagagtgca-caaaatgaggtacgcatcaaaa-gggtgaagaaat 866
|||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 120 ttgctcaagcggttagagtgcagcaaaatgaggtacgcatcaaaaggggtgaagaaat 177
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7812
Number of Sequences: 1807
Number of extensions: 7812
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)