BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC25ZA02FM1.SCF screened BAC_end
         (936 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1688                                                        1441   0.0  

>3x_Contig1688 
          Length = 18058

 Score = 1441 bits (727), Expect = 0.0
 Identities = 826/849 (97%), Gaps = 9/849 (1%)
 Strand = Plus / Plus

                                                                        
Query: 89   tgagaatacctttaactaatactccagatttattcgatctaaatattgtttaaatttaca 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6926 tgagaatacctttaactaatactccagatttattcgatctaaatattgtttaaatttaca 6985

                                                                        
Query: 149  catataatgactattattttttaagtaaagttggatagggttaatttaaacaacaacacc 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6986 catataatgactattattttttaagtaaagttggatagggttaatttaaacaacaacacc 7045

                                                                        
Query: 209  agagttggattcaattcntggccacaagtcggcacattccttaccgactggaccagtaac 268
            |||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7046 agagttggaagcaattcttggccacaagtcggcacattccttaccgactggaccagtaac 7105

                                                                        
Query: 269  agcggaacccttcatttcacccttagggttagcaatgacaccggcattgtcttcgaagta 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7106 agcggaacccttcatttcacccttagggttagcaatgacaccggcattgtcttcgaagta 7165

                                                                        
Query: 329  caagaagacaccgtcctttcttctccaagccttggattgtctgacaacgatagctggcat 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7166 caagaagacaccgtcctttcttctccaagccttggattgtctgacaacgatagctggcat 7225

                                                                        
Query: 389  aaccttctttctcaattcaggcttacccttcttgacagtagccataaccatatcacctag 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7226 aaccttctttctcaattcaggcttacccttcttgacagtagccataaccatatcacctag 7285

                                                                        
Query: 449  agatgcagctggcaatctgttcaatcttgaaccagaacccttgacggccatgatgtacaa 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7286 agatgcagctggcaatctgttcaatcttgaaccagaacccttgacggccatgatgtacaa 7345

                                                                        
Query: 509  gtttctagcaccagaattgtcagcacaattcataatggcaccagttggtagacctaactg 568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7346 gtttctagcaccagaattgtcagcacaattcataatggcaccagttggtagacctaactg 7405

                                                                        
Query: 569  ttaaaataaaattgacaacacccattccttaagaatgaatgtattcataaaatttgttag 628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7406 ttaaaataaaattgacaacacccattccttaagaatgaatgtattcataaaatttgttag 7465

                                                                        
Query: 629  taaaatagttcatatatttgaattcaaactgcgagggacatcacatcgagactagtcatc 688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7466 taaaatagttcatatatttgaattcaaactgcgagggacatcacatcgagactagtcatc 7525

                                                                        
Query: 689  aagttcttttgcacctcataatatcaattatttggtaacacagtttgattcatgaaaata 748
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7526 aagttcttttgcacctcataatatcaattatttggtaacacag-ttgattcatgaaaata 7584

                                                                        
Query: 749  aaagcacttaaacctgatagtgtttgaagttgaaagtttcaggatcatttagctaaaacg 808
            ||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||
Sbjct: 7585 aaagcacttaaacctgatagtgttgaaagttgaaagtttcaggatcatttagct-aaacg 7643

                                                                        
Query: 809  tcgttgagggtatatttgcaggttcagtataatcgcga-tcggttttttttctttatttt 867
            ||||||| |||||| ||||| ||||||||| ||||||| |||| |||||||||| |||||
Sbjct: 7644 tcgttgatggtatagttgcatgttcagtat-atcgcgagtcgg-tttttttcttcatttt 7701

                                                                        
Query: 868  ttttgggggttacatatttcccattcatttttgactatttcttcattcgatttggattgg 927
             ||  ||||||||||| |||||||||| ||||||||| ||||||| |||| |||||| ||
Sbjct: 7702 ctt--ggggttacata-ttcccattcagttttgacta-ttcttcactcgagttggatggg 7757

                     
Query: 928  tcacatatt 936
            |||||||||
Sbjct: 7758 tcacatatt 7766


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8489
Number of Sequences: 1807
Number of extensions: 8489
Number of successful extensions: 112
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)