BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC25ZA02RM1.SCF screened BAC_end (1085 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig637 652 0.0 >3x_Contig637 Length = 2206 Score = 652 bits (329), Expect = 0.0 Identities = 362/373 (97%) Strand = Plus / Minus Query: 61 gcttcaacaaatccattttcccattctggaaagctcgtcgacagacaactcccggcatcg 120 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 541 gcttcaacaaatccattttcccattctggaaagctcgtcgactgaattctcccggcatcg 482 Query: 121 ccatacgaatatctctttcagagtcccgcaaaccctggattgagtttaacgctgccttta 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ccatacgaatatctctttcagagtcccgcaaaccctggattgagtttaacgctgccttta 422 Query: 181 taatagctttccccccatgtagatgcaattccactaaatcttcacctgtaaaggtttttg 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 421 taatagctttccccccatgtagatgcaattccactaaatcttcacctgtaaaggtccgtg 362 Query: 241 gttgtgggaagtacaagactaacgcttcatctatcagagttgatgccttgggatcatata 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gttgtgggaagtacaagactaacgcttcatctatcagagttgatgccttgggatcatata 302 Query: 301 atgaccgaatcatcggtttcctctgccgtagcggtttttttggcgacaatttttttaaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 atgaccgaatcatcggtttcctctgccgtagcggtttttttggcgacaatttttttaaga 242 Query: 361 tatactttgaatgtgtacccgatctcctaattataactattgcagagtgcttatttgatg 420 ||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| Sbjct: 241 tatactttgaatgtgtacccgatatcctaattatagctattgcagagtgctgatttgatg 182 Query: 421 gcgtttataatgc 433 ||||| ||||||| Sbjct: 181 gcgttgataatgc 169 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,028 Number of Sequences: 1807 Number of extensions: 10028 Number of successful extensions: 108 Number of sequences better than 1.0e-20: 1 length of query: 1085 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1069 effective length of database: 10,329,639 effective search space: 11042384091 effective search space used: 11042384091 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)